xjtu-omics / msisensor-rnaLinks
MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data
☆21Updated 3 months ago
Alternatives and similar repositories for msisensor-rna
Users that are interested in msisensor-rna are comparing it to the libraries listed below
Sorting:
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- An R package for predicting HR deficiency from mutation contexts☆28Updated 4 months ago
- An R package to time somatic mutations☆62Updated 4 years ago
- ☆38Updated 5 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆13Updated 7 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- ☆25Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 5 months ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 11 months ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated 4 months ago
- Snakemake workflow for somatic mutation detection without matched normal samples☆11Updated 2 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 6 months ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 7 months ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆11Updated 4 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 11 months ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago