xjtu-omics / msisensor-rna
MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data
☆21Updated 2 months ago
Alternatives and similar repositories for msisensor-rna:
Users that are interested in msisensor-rna are comparing it to the libraries listed below
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Micro DNA identification☆23Updated 3 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 2 months ago
- ☆38Updated 5 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- ☆13Updated 7 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- ☆25Updated 5 years ago
- Clonality inference in multiple tumor samples using phylogeny☆13Updated 7 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 11 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆57Updated 4 months ago
- Fork of the Polysolver project☆31Updated 5 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆45Updated last month
- Benchmarking of CNV calling tools☆18Updated 5 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- ☆19Updated 7 years ago
- Codes and Data for FFPEsig manuscript☆16Updated last year
- An R package to time somatic mutations☆61Updated 4 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- ☆11Updated 2 years ago
- Snakemake workflow for somatic mutation detection without matched normal samples☆11Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆16Updated last month
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated 2 months ago