AstraZeneca-NGS / VarDictJava

Related projects: ⓘ

• AstraZeneca-NGS / VarDict
  VarDict
  ☆187Updated 8 months ago
• PapenfussLab / gridss
  GRIDSS: the Genomic Rearrangement IDentification Software Suite
  ☆250Updated 8 months ago
• ga4gh / benchmarking-tools
  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
  ☆187Updated 3 years ago
• atks / vt
  A tool set for short variant discovery in genetic sequence data.
  ☆190Updated 3 years ago
• BoevaLab / FREEC
  Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
  ☆146Updated 3 weeks ago
• hartwigmedical / hmftools
  Various algorithms for analysing genomics data
  ☆189Updated this week
• mozack / abra2
  ABRA2
  ☆90Updated last year
• ndaniel / fusioncatcher
  Finder of Somatic Fusion Genes in RNA-seq data
  ☆141Updated last year
• hall-lab / svtools
  Tools for processing and analyzing structural variants.
  ☆147Updated 2 years ago
• FRED-2 / OptiType
  Precision HLA typing from next-generation sequencing data
  ☆182Updated 6 months ago
• bioinform / somaticseq
  An ensemble approach to accurately detect somatic mutations using SomaticSeq
  ☆191Updated last month
• OpenGene / GeneFuse
  Gene fusion detection and visualization
  ☆114Updated 2 years ago
• lgmgeo / AnnotSV
  Annotation and Ranking of Structural Variation
  ☆210Updated 2 weeks ago
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆169Updated this week
• genome / breakdancer
  SV detection from paired end reads mapping
  ☆113Updated 5 years ago
• gatk-workflows / gatk4-germline-snps-indels
  Workflows for germline short variant discovery with GATK4
  ☆133Updated 3 years ago
• walaj / svaba
  Structural variation and indel detection by local assembly
  ☆230Updated 3 months ago
• pcingola / SnpEff
  ☆244Updated last week
• dkoboldt / varscan
  Variant calling and somatic mutation/CNV detection for next-generation sequencing data
  ☆152Updated last year
• vibansal / HapCUT2
  software tools for haplotype assembly from sequence data
  ☆202Updated last month
• parklab / NGSCheckMate
  Software program for checking sample matching for NGS data
  ☆122Updated 3 months ago
• stevekm / IGV-snapshot-automator
  Script to automatically create and run IGV snapshot batchscripts
  ☆137Updated last year
• nygenome / lancet
  Microassembly based somatic variant caller for NGS data
  ☆153Updated 2 years ago
• ding-lab / msisensor
  microsatellite instability detection using tumor only or paired tumor-normal data
  ☆124Updated 3 years ago
• OpenGene / gencore
  Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
  ☆113Updated 10 months ago
• zwdzwd / transvar
  TransVar - multiway annotator for precision medicine
  ☆116Updated last year
• CCDG / Pipeline-Standardization
  ☆81Updated 5 years ago
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆92Updated 3 months ago
• lima1 / PureCN
  Copy number calling and variant classification using targeted short read sequencing
  ☆127Updated last week
• VanLoo-lab / ascat
  ASCAT R package
  ☆162Updated last month