VarDict Java port
☆141Jan 5, 2024Updated 2 years ago
Alternatives and similar repositories for VarDictJava
Users that are interested in VarDictJava are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VarDict☆203Jan 5, 2024Updated 2 years ago
- Tools for working with genomic and high throughput sequencing data.☆365Updated this week
- Strelka2 germline and somatic small variant caller☆393Apr 20, 2026Updated last week
- ☆36Mar 16, 2021Updated 5 years ago
- Gene fusion detection and visualization☆132Feb 21, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆167Mar 28, 2023Updated 3 years ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 10 months ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 7 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆248Oct 18, 2024Updated last year
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆513Feb 26, 2026Updated 2 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆283May 21, 2025Updated 11 months ago
- ABRA2☆96Dec 2, 2022Updated 3 years ago
- Copy number calling and variant classification using targeted short read sequencing☆146Feb 19, 2026Updated 2 months ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Microsatellite instability (MSI) detection for tumor only data.☆114Apr 23, 2024Updated 2 years ago
- Structural variant and indel caller for mapped sequencing data☆462Oct 11, 2025Updated 6 months ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆418Mar 13, 2026Updated last month
- ☆69Jun 21, 2022Updated 3 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆205Updated this week
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Dec 14, 2020Updated 5 years ago
- Structural variation and indel detection by local assembly☆255Updated this week
- Software program for checking sample matching for NGS data☆139Jun 20, 2024Updated last year
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a lightweight db framework for exploring genetic variation.☆327Apr 28, 2020Updated 6 years ago
- STAR-Fusion codebase☆254Apr 18, 2026Updated last week
- Personal Cancer Genome Reporter (PCGR)☆276Updated this week
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Jul 30, 2020Updated 5 years ago
- ☆46Nov 18, 2019Updated 6 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- The next version of bwa-mem☆829Oct 15, 2025Updated 6 months ago
- TransVar - multiway annotator for precision medicine☆128Apr 19, 2023Updated 3 years ago
- FusionInspector code☆60Apr 23, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆545Apr 13, 2026Updated 2 weeks ago
- Copy number variant detection from targeted DNA sequencing☆606Apr 15, 2026Updated 2 weeks ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆401Aug 30, 2025Updated 7 months ago
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated 2 months ago
- A tool set for short variant discovery in genetic sequence data.☆205May 4, 2021Updated 4 years ago
- Count bases in BAM/CRAM files☆324Jan 31, 2022Updated 4 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆269Sep 21, 2025Updated 7 months ago