AstraZeneca-NGS / VarDictJavaLinks
VarDict Java port
☆136Updated last year
Alternatives and similar repositories for VarDictJava
Users that are interested in VarDictJava are comparing it to the libraries listed below
Sorting:
- VarDict☆201Updated last year
- ABRA2☆95Updated 3 years ago
- Workflows for germline short variant discovery with GATK4☆139Updated 4 years ago
- A tool set for short variant discovery in genetic sequence data.☆203Updated 4 years ago
- Tools for processing and analyzing structural variants.☆156Updated 3 years ago
- TransVar - multiway annotator for precision medicine☆126Updated 2 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- Gene fusion detection and visualization☆130Updated 3 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆173Updated last year
- The nimble & robust variant annotator☆188Updated last year
- Structural variation and indel detection by local assembly☆250Updated 3 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- SV detection from paired end reads mapping☆118Updated 6 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 3 months ago
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- WisecondorX — An evolved WISECONDOR☆108Updated 3 weeks ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆174Updated 5 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆247Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- Software program for checking sample matching for NGS data☆137Updated last year
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆208Updated 4 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆201Updated 4 months ago
- A tool for estimating repeat sizes☆200Updated last year
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆280Updated 7 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆230Updated 3 years ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- Whole Genome Simulator for Next-Generation Sequencing☆102Updated 3 weeks ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago