AstraZeneca-NGS / VarDictJavaLinks
VarDict Java port
☆135Updated last year
Alternatives and similar repositories for VarDictJava
Users that are interested in VarDictJava are comparing it to the libraries listed below
Sorting:
- VarDict☆198Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆147Updated last month
- ABRA2☆92Updated 2 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆163Updated 2 years ago
- TransVar - multiway annotator for precision medicine☆126Updated 2 years ago
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago
- A tool set for short variant discovery in genetic sequence data.☆202Updated 4 years ago
- Gene fusion detection and visualization☆128Updated 3 years ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- Software program for checking sample matching for NGS data☆137Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆171Updated last year
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago
- The nimble & robust variant annotator☆185Updated last year
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- Structural variation and indel detection by local assembly☆246Updated 3 weeks ago
- SV detection from paired end reads mapping☆117Updated 6 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆244Updated 11 months ago
- WisecondorX — An evolved WISECONDOR☆103Updated last month
- Copy number calling and variant classification using targeted short read sequencing☆140Updated last month
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆158Updated 3 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆174Updated 5 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Updated 4 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆110Updated last year
- ☆82Updated 6 years ago
- Precision HLA typing from next-generation sequencing data☆204Updated last year
- A structural variation pipeline for short-read sequencing☆194Updated this week
- Short-read and long-read sequencing tools for diagnostics☆167Updated this week
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆90Updated 3 weeks ago