AstraZeneca-NGS / VarDictJava
VarDict Java port
☆131Updated last year
Alternatives and similar repositories for VarDictJava:
Users that are interested in VarDictJava are comparing it to the libraries listed below
- VarDict☆191Updated last year
- A tool set for short variant discovery in genetic sequence data.☆194Updated 3 years ago
- Various algorithms for analysing genomics data☆203Updated this week
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆154Updated 4 months ago
- ABRA2☆92Updated 2 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆143Updated last year
- A structural variation pipeline for short-read sequencing☆175Updated this week
- ☆261Updated last month
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆262Updated last year
- SV detection from paired end reads mapping☆117Updated 5 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆155Updated last year
- Gene fusion detection and visualization☆119Updated 2 years ago
- Workflows for germline short variant discovery with GATK4☆133Updated 3 years ago
- Tools for processing and analyzing structural variants.☆150Updated 2 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆80Updated last month
- tools for adding mutations to existing .bam files, used for testing mutation callers☆238Updated 3 months ago
- Precision HLA typing from next-generation sequencing data☆194Updated 10 months ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆195Updated 3 years ago
- Script to automatically create and run IGV snapshot batchscripts☆139Updated 2 years ago
- ☆82Updated 6 years ago
- Copy number calling and variant classification using targeted short read sequencing☆132Updated this week
- Software program for checking sample matching for NGS data☆126Updated 6 months ago
- Structural variation and indel detection by local assembly☆239Updated last month
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆94Updated 7 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads