Personal Cancer Genome Reporter (PCGR)
☆274Oct 7, 2025Updated 4 months ago
Alternatives and similar repositories for pcgr
Users that are interested in pcgr are comparing it to the libraries listed below
Sorting:
- Cancer Predisposition Sequencing Reporter (CPSR)☆63Oct 19, 2025Updated 4 months ago
- Characterization of Germline variants☆100Mar 15, 2022Updated 3 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago
- A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.☆323Mar 6, 2025Updated 11 months ago
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆206May 28, 2023Updated 2 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆398Aug 30, 2025Updated 6 months ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆304Nov 14, 2025Updated 3 months ago
- Genomic VCF to tab-separated values☆48Mar 9, 2023Updated 2 years ago
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆485Updated this week
- A modular annotation tool for genomic variants☆146Updated this week
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Jan 6, 2021Updated 5 years ago
- Generic human DNA variant annotation pipeline☆60Feb 13, 2024Updated 2 years ago
- VCF visualization interface☆177Updated this week
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆826Feb 10, 2026Updated 2 weeks ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Apr 2, 2025Updated 11 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- Targeted and non-targeted anticancer drugs and drug regimens☆30Updated this week
- Python package to annotate and visualize gene fusions.☆65Sep 30, 2024Updated last year
- Strelka2 germline and somatic small variant caller☆390Dec 29, 2021Updated 4 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆279May 21, 2025Updated 9 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Jun 22, 2022Updated 3 years ago
- Analysis pipeline for cancer sequencing data☆112Apr 30, 2025Updated 10 months ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 6 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆113Apr 23, 2024Updated last year
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Oct 6, 2020Updated 5 years ago
- A flexible framework for rapid genome analysis and interpretation☆319Oct 18, 2022Updated 3 years ago
- Detect and visualize target mutations by scanning FastQ files directly☆157Feb 10, 2022Updated 4 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆86Jan 5, 2026Updated last month
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated 4 months ago
- Structural variation and indel detection by local assembly☆252Sep 16, 2025Updated 5 months ago
- ☆69Jun 21, 2022Updated 3 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆338Feb 22, 2026Updated last week
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated last year
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆507Nov 6, 2025Updated 3 months ago
- SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…☆63Apr 24, 2025Updated 10 months ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆91Sep 16, 2025Updated 5 months ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆203Jan 5, 2026Updated last month