☆57Jan 11, 2023Updated 3 years ago
Alternatives and similar repositories for DECoN
Users that are interested in DECoN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆84Jun 30, 2025Updated last year
- CAVA (Clinical Annotation of VAriants)☆14Sep 28, 2018Updated 7 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 6 years ago
- CNV detection tool for targeted NGS panel data☆17Feb 28, 2022Updated 4 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆75Jun 26, 2023Updated 3 years ago
- ☆15Apr 20, 2023Updated 3 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Feb 20, 2026Updated 6 months ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆38Sep 16, 2025Updated 11 months ago
- The nimble & robust variant annotator☆197Apr 20, 2026Updated 4 months ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆96Jun 29, 2026Updated 2 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Sep 4, 2024Updated last year
- Method to detect exonic CNVs in NGS Gene Targeted Panels☆16Dec 3, 2019Updated 6 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆79Jul 14, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆43Aug 17, 2021Updated 5 years ago
- ☆18Jul 13, 2021Updated 5 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆217Jun 23, 2026Updated 2 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆117Apr 23, 2024Updated 2 years ago
- Software program for checking sample matching for NGS data☆143Jun 20, 2024Updated 2 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆21Feb 20, 2021Updated 5 years ago
- A Tool to Annotate and Prioritize Exome Variants☆263Aug 3, 2026Updated 3 weeks ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Structural variant and indel caller for mapped sequencing data☆468Oct 11, 2025Updated 10 months ago
- ☆32Aug 2, 2022Updated 4 years ago
- QDNAseq package for Bioconductor☆56Jul 27, 2024Updated 2 years ago
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Nov 9, 2025Updated 9 months ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆18Mar 10, 2018Updated 8 years ago
- WisecondorX — An evolved WISECONDOR☆116Jul 1, 2026Updated last month
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆19Jun 29, 2021Updated 5 years ago
- Absolute Copy Number Estimation using low-coverage whole genome sequencing data☆21Oct 17, 2025Updated 10 months ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Oct 5, 2019Updated 6 years ago
- CNV detection tool for WES data☆13Aug 21, 2024Updated 2 years ago
- Concordance and contamination estimator for tumor–normal pairs☆60Oct 22, 2024Updated last year
- ☆127Sep 5, 2023Updated 2 years ago
- ☆69Jun 21, 2022Updated 4 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- Annotation and Ranking of Structural Variation☆310Aug 11, 2026Updated 2 weeks ago