RahmanTeam / DECoNLinks
☆54Updated 3 years ago
Alternatives and similar repositories for DECoN
Users that are interested in DECoN are comparing it to the libraries listed below
Sorting:
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆70Updated 2 years ago
- QDNAseq package for Bioconductor☆54Updated last year
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- ☆43Updated 2 years ago
- Burden testing against public controls☆50Updated last year
- Concordance and contamination estimator for tumor–normal pairs☆59Updated last year
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆77Updated 7 months ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 8 months ago
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- ☆22Updated 2 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- WisecondorX — An evolved WISECONDOR☆111Updated 2 months ago
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆47Updated last year
- ☆16Updated 4 years ago
- A suite of tools for detecting expansions of short tandem repeats☆85Updated 2 years ago
- CNV screening and annotation tool☆25Updated 9 years ago
- Helper scripts for biological data processing from Sentieon☆64Updated 2 weeks ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Updated 4 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆76Updated 3 years ago
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆46Updated 6 years ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆51Updated 2 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated 2 years ago
- Converts snpeff annotations into MAF☆11Updated last year
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆21Updated 2 years ago
- ☆49Updated 3 years ago
- CN-Learn☆30Updated 6 years ago