RahmanTeam / DECoNLinks
☆54Updated 2 years ago
Alternatives and similar repositories for DECoN
Users that are interested in DECoN are comparing it to the libraries listed below
Sorting:
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆68Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆73Updated last year
- QDNAseq package for Bioconductor☆52Updated last year
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆20Updated 2 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆74Updated 4 months ago
- Concordance and contamination estimator for tumor–normal pairs☆58Updated last year
- WisecondorX — An evolved WISECONDOR☆105Updated 2 months ago
- ☆46Updated 5 years ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- ☆43Updated last year
- ⛏ HLA predictions from NGS shotgun data☆55Updated 4 months ago
- Burden testing against public controls☆50Updated last year
- CN-Learn☆30Updated 5 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 weeks ago
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆46Updated last year
- CNV screening and annotation tool☆25Updated 8 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- Helper scripts for biological data processing from Sentieon☆64Updated 2 weeks ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆49Updated 2 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆76Updated 3 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- ☆16Updated 4 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year