RahmanTeam / DECoNLinks
☆53Updated 2 years ago
Alternatives and similar repositories for DECoN
Users that are interested in DECoN are comparing it to the libraries listed below
Sorting:
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆66Updated 2 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆71Updated 11 months ago
- QDNAseq package for Bioconductor☆50Updated last year
- Concordance and contamination estimator for tumor–normal pairs☆58Updated 10 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆73Updated 2 months ago
- WisecondorX — An evolved WISECONDOR☆101Updated last week
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 4 years ago
- CNV screening and annotation tool☆25Updated 8 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆20Updated last year
- CN-Learn☆29Updated 5 years ago
- ☆46Updated 5 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆50Updated last year
- Burden testing against public controls☆50Updated last year
- ⛏ HLA predictions from NGS shotgun data☆54Updated 2 months ago
- ☆16Updated 4 years ago
- ☆41Updated last year
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆46Updated last year
- A suite of tools for detecting expansions of short tandem repeats☆82Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆49Updated last week
- Comprehensive benchmark of structural variant callers☆46Updated 4 years ago
- Tumor Mutational Burden☆61Updated last month
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆41Updated 5 years ago
- QDNAseq bin annotation for hg38☆16Updated 4 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆22Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago