☆55Jan 11, 2023Updated 3 years ago
Alternatives and similar repositories for DECoN
Users that are interested in DECoN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆78Jun 30, 2025Updated 9 months ago
- CAVA (Clinical Annotation of VAriants)☆14Sep 28, 2018Updated 7 years ago
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Jun 30, 2020Updated 5 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆73Jun 26, 2023Updated 2 years ago
- Method to detect exonic CNVs in NGS Gene Targeted Panels☆16Dec 3, 2019Updated 6 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Feb 20, 2026Updated last month
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆37Sep 16, 2025Updated 6 months ago
- The nimble & robust variant annotator☆193Apr 25, 2024Updated last year
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆92Sep 16, 2025Updated 6 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Sep 4, 2024Updated last year
- ☆14Apr 20, 2023Updated 2 years ago
- Microsatellite Analysis for Normal-Tumor InStability☆78Jul 14, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆42Aug 17, 2021Updated 4 years ago
- ☆17Jul 13, 2021Updated 4 years ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆212Mar 16, 2026Updated 3 weeks ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- ☆32Aug 2, 2022Updated 3 years ago
- Software program for checking sample matching for NGS data☆139Jun 20, 2024Updated last year
- A Tool to Annotate and Prioritize Exome Variants☆254Apr 1, 2026Updated last week
- Structural variant and indel caller for mapped sequencing data☆462Oct 11, 2025Updated 6 months ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Microsatellite instability (MSI) detection for tumor only data.☆114Apr 23, 2024Updated last year
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Feb 20, 2021Updated 5 years ago
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Nov 9, 2025Updated 5 months ago
- QDNAseq package for Bioconductor☆54Jul 27, 2024Updated last year
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Mar 10, 2018Updated 8 years ago
- CNV detection tool for WES data☆12Aug 21, 2024Updated last year
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- WisecondorX — An evolved WISECONDOR☆114Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Annotation and Ranking of Structural Variation☆292Apr 3, 2026Updated last week
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- ☆69Jun 21, 2022Updated 3 years ago
- ☆123Sep 5, 2023Updated 2 years ago
- Overall management and deployment of the BRCA Exchange web portal and pipeline scripts☆27Apr 1, 2026Updated last week
- A tool for estimating repeat sizes☆208Jan 30, 2024Updated 2 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆509Feb 26, 2026Updated last month