Illumina / strelkaLinks
Strelka2 germline and somatic small variant caller
☆384Updated 3 years ago
Alternatives and similar repositories for strelka
Users that are interested in strelka are comparing it to the libraries listed below
Sorting:
- Count bases in BAM/CRAM files☆319Updated 3 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆488Updated 2 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆327Updated 5 months ago
- STAR-Fusion codebase☆245Updated 3 weeks ago
- Plot structural variant signals from many BAMs and CRAMs☆555Updated last year
- Structural variant and indel caller for mapped sequencing data☆447Updated 2 weeks ago
- This Snakemake pipeline implements the GATK best-practices workflow☆260Updated 2 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆248Updated last month
- ☆293Updated last month
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆402Updated 2 months ago
- Documentation for the ANNOVAR software☆245Updated 3 months ago
- VarDict☆198Updated last year
- C++ API & command-line toolkit for working with BAM data☆429Updated 5 months ago
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆158Updated 3 years ago
- HiC-Pro: An optimized and flexible pipeline for Hi-C data processing☆423Updated last year
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆163Updated 2 years ago
- Haplotype VCF comparison tools☆447Updated last year
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆277Updated 5 months ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆205Updated 4 years ago
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆197Updated 2 years ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆454Updated last year
- SUPPA: Fast quantification of splicing and differential splicing☆281Updated last year
- annotate a VCF with other VCFs/BEDs/tabixed files☆385Updated 2 months ago
- BEDOPS: high-performance genomic feature operations☆352Updated 6 months ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆230Updated 3 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆199Updated 2 months ago
- Bayesian haplotype-based mutation calling☆319Updated 3 weeks ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆246Updated last year
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆385Updated last week
- Reads simulator☆282Updated 4 years ago