imgag / ClinCNV
Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
☆85Updated 3 months ago
Alternatives and similar repositories for ClinCNV:
Users that are interested in ClinCNV are comparing it to the libraries listed below
- Relevant papers for CNV and SV approaches☆94Updated 6 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆69Updated 8 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 2 years ago
- phasing and Allele Specific Expression from RNA-seq☆114Updated 9 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- QDNAseq package for Bioconductor☆50Updated 9 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 4 years ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆79Updated 2 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆110Updated 3 weeks ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated 11 months ago
- ☆120Updated 6 months ago
- BAM Statistics, Feature Counting and Annotation☆149Updated 2 months ago
- ABRA2☆92Updated 2 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆145Updated 2 years ago
- WisecondorX — An evolved WISECONDOR☆97Updated 7 months ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆69Updated this week
- Tip and tricks for BAM files☆85Updated 6 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆159Updated 8 months ago
- Allele-specific alignment sorting☆55Updated 2 years ago
- Read visualizer for structural variants☆83Updated 6 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆56Updated 4 years ago
- ☆68Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 2 months ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆62Updated last year
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago