biosinodx / SCcaller
Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
☆34Updated 3 months ago
Alternatives and similar repositories for SCcaller:
Users that are interested in SCcaller are comparing it to the libraries listed below
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data☆11Updated 4 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- ☆16Updated 6 years ago
- chia pet analysis software☆25Updated 6 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 9 months ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 3 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- Next-Gen Sequencing tools from the Horvath Lab☆39Updated this week
- RNA editing tests☆16Updated 4 years ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆21Updated 2 months ago
- A toolkit for working with ATAC-seq data.☆24Updated 9 months ago
- Micro DNA identification☆22Updated 3 years ago
- ☆17Updated 4 years ago
- ☆13Updated 7 years ago
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- snakemake workflow for post-processing scATACseq data☆20Updated 4 years ago
- ☆38Updated 5 years ago
- ATAC-seq processing pipeline☆32Updated 2 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- ☆18Updated 3 years ago
- GTEx analysis scripts☆20Updated 7 years ago