biosinodx / SCcallerLinks
Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
☆35Updated 10 months ago
Alternatives and similar repositories for SCcaller
Users that are interested in SCcaller are comparing it to the libraries listed below
Sorting:
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 6 months ago
- chia pet analysis software☆25Updated 6 years ago
- ☆17Updated 6 years ago
- Micro DNA identification☆24Updated 4 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated 3 weeks ago
- ☆19Updated 2 years ago
- ☆18Updated 4 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- ☆23Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- QC report generator for Hi-C pairs file☆12Updated 5 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- ☆13Updated 8 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆21Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- A collection of modules to process and analyze IMGT-HLA sequences.☆28Updated 2 years ago
- ☆23Updated 7 months ago
- Single Cell Analysis Automated Workflow☆27Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago