biosinodx / SCcaller
Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
☆34Updated last year
Related projects ⓘ
Alternatives and complementary repositories for SCcaller
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- RNA editing tests☆16Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- ☆15Updated 4 years ago
- HiC for copy Number variation and Translocation detection☆35Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- ☆18Updated 2 years ago
- ☆17Updated 5 years ago
- Micro DNA identification☆22Updated 3 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆50Updated last week
- chia pet analysis software☆25Updated 5 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆44Updated 5 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 6 months ago
- ☆23Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆38Updated last year
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆10Updated 2 years ago
- Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data☆11Updated 4 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆39Updated last week
- Long read to rMATS☆31Updated last year
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆30Updated 3 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆28Updated 5 years ago
- ATAC-seq processing pipeline☆31Updated 2 years ago
- Burden testing against public controls☆50Updated 8 months ago
- ☆13Updated 7 years ago
- snakemake workflow for post-processing scATACseq data☆19Updated 4 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆14Updated last month
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 4 years ago