Alternatives and similar repositories for SCOUP

Users that are interested in SCOUP are comparing it to the libraries listed below

• yanailab / knn-smoothing
  K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
  ☆60Updated 3 years ago
• czbiohub-sf / tabula-muris-vignettes
  Examples analyses using the single-cell RNA-seq data from mouse cell atlases
  ☆22Updated 6 years ago
• nghiavtr / BPSC
  Beta-Poisson model for single-cell RNA-seq data analyses
  ☆16Updated 6 years ago
• pachterlab / MBGBLHGP_2019
  Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"
  ☆23Updated 4 years ago
• hemberg-lab / D3E
  Discrete Distributional Differential Expression
  ☆22Updated 7 years ago
• Oshlack / splatter-paper
  Data and analysis for the Splatter paper
  ☆29Updated 8 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 7 years ago
• GSEA-MSigDB / gsea-desktop
  Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statisticall…
  ☆38Updated 10 months ago
• dan-landau / IronThrone-GoT
  processes GoT amplicon data and generates a table of metrics
  ☆32Updated 3 years ago
• AllonKleinLab / PBA
  Population balance analysis
  ☆44Updated 6 years ago
• rargelaguet / scnmt_gastrulation
  scNMT-seq gastrulation
  ☆42Updated 2 years ago
• praneet1988 / Inferring-and-Visualizing-RNA-Velocity-in-Bulk-RNA-SEQ
  Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.
  ☆17Updated 6 years ago
• swoodhouse / SCNS-Toolkit
  Single cell network synthesis toolkit
  ☆23Updated 4 years ago
• aaronmck / Cas9FateMapping
  Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system
  ☆25Updated 8 years ago
• klarman-cell-observatory / scPlot
  Single cell interactive plotting tools
  ☆24Updated 5 years ago
• pachterlab / scRNA-Seq-TCC-prep
  Preprocessing of single-cell RNA-Seq (deprecated)
  ☆62Updated 6 years ago
• YosefLab / scone
  ☆55Updated 11 months ago
• kieranrcampbell / clonealign
  Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data
  ☆36Updated 5 years ago
• sbenz / Paradigm
  PAthway Representation and Analysis by Direct Inference on Graphical Models
  ☆46Updated 7 years ago
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆29Updated 5 years ago
• ncbi / scPopCorn
  A python tool to do comparative analysis of mulitple single cell datasets.
  ☆21Updated 6 years ago
• vals / Blog
  ☆38Updated last week
• SaskiaFreytag / cluster_benchmarking_code
  ☆16Updated 7 years ago
• liuqivandy / scRNABatchQC
  ☆13Updated 4 years ago
• Bioconductor / ExperimentHub
  Client to access ExperimentHub resources
  ☆11Updated 3 months ago
• JEFworks / MUDAN
  Multi-sample Unified Discriminant ANalysis
  ☆74Updated 2 years ago
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆36Updated 6 years ago
• kieranrcampbell / pseudogp
  Probabilistic pseudotime for single-cell RNA-seq data
  ☆10Updated 8 years ago
• yanailab / moana
  Moana: Robust cell type classification of single-cell RNA-Seq data
  ☆24Updated 7 years ago
• JinmiaoChenLab / Rphenograph
  Rphenograph: R implementation of the PhenoGraph algorithm
  ☆52Updated 5 years ago