hmatsu1226 / SCOUPLinks
SCOUP is a probabilistic model to analyze single-cell expression data during differentiation
☆10Updated 8 years ago
Alternatives and similar repositories for SCOUP
Users that are interested in SCOUP are comparing it to the libraries listed below
Sorting:
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆56Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆45Updated last year
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Population balance analysis☆44Updated 6 years ago
- ☆16Updated 6 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆39Updated last year
- Inference of switch-like differential expression along single-cell trajectories☆20Updated 7 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆48Updated 6 years ago
- ☆55Updated 5 months ago
- ☆29Updated 2 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48Updated 5 years ago
- Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.☆16Updated 5 years ago
- Citrus Development Code☆31Updated last year
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 4 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- post-clustering differential expression test☆35Updated 6 years ago
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆45Updated 7 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆10Updated 7 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 4 years ago
- Discrete Distributional Differential Expression☆22Updated 6 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- CDSeq MATLAB code. CDSeq is a novel computational complete deconvolution method for dissecting tissue heterogeneity.☆11Updated 4 years ago
- Normalization for single cell RNA-seq data☆48Updated 2 months ago
- ☆62Updated 4 months ago
- Clone of the Bioconductor repository for the scRNAseq package.☆29Updated 6 months ago
- ☆21Updated last year