☆18Feb 25, 2022Updated 4 years ago
Alternatives and similar repositories for LiRA
Users that are interested in LiRA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Jul 28, 2025Updated 8 months ago
- ☆15Mar 27, 2026Updated 2 weeks ago
- BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium☆11Jan 7, 2024Updated 2 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 7 years ago
- ☆12Aug 6, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- PTa Analysis TOolkit☆15Mar 2, 2026Updated last month
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆10Jan 23, 2023Updated 3 years ago
- WGS Pipeline☆13Jan 19, 2018Updated 8 years ago
- ☆34Jun 7, 2019Updated 6 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆158Oct 30, 2025Updated 5 months ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated 2 months ago
- Analysis of co-expression networks from RNA-seq data☆11Apr 6, 2017Updated 9 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆13Mar 23, 2024Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Jun 7, 2019Updated 6 years ago
- A simple Bisulfite FastQ Read Simulator (BiQRS)☆13Jul 9, 2024Updated last year
- Base-wise aggregation and functional prediction for human non-coding regulatory variants☆15Dec 20, 2023Updated 2 years ago
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- A comprehensive toolkit for mutational signature analysis☆41Jul 19, 2024Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25May 2, 2018Updated 7 years ago
- This repository collects pipelines, codes, and some intermediate results for adult brain somatic mosaicism study.☆15Jun 14, 2025Updated 9 months ago
- Subtyping tool for multi-omic data☆13Jul 6, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics☆13Oct 1, 2024Updated last year
- Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end re…☆17Jan 23, 2017Updated 9 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13May 3, 2019Updated 6 years ago
- MTAE-based 5UTR design model☆10Jan 23, 2024Updated 2 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Apr 4, 2022Updated 4 years ago
- Calculates allelic Fold Change (aFC) using standard input files for fastQTL.☆26Jun 30, 2022Updated 3 years ago
- Collection of tools and resources for linked-reads☆13Apr 25, 2025Updated 11 months ago
- Breast cancer risk prediction using genotyped data☆12Oct 11, 2018Updated 7 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- deTS☆18Apr 21, 2020Updated 5 years ago
- cEll tyPe enrIChment☆16Dec 11, 2022Updated 3 years ago
- Visualization methods for omics dataset quality control☆10Jul 17, 2025Updated 8 months ago
- R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)☆12Jun 30, 2021Updated 4 years ago
- A python tool to detect internal tandem duplication with robust variant allele frequency estimation☆12Feb 3, 2026Updated 2 months ago
- ☆14Dec 7, 2021Updated 4 years ago
- ☆22Sep 1, 2022Updated 3 years ago