parklab / LiRALinks
☆18Updated 3 years ago
Alternatives and similar repositories for LiRA
Users that are interested in LiRA are comparing it to the libraries listed below
Sorting:
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆54Updated 3 months ago
- Burden testing against public controls☆50Updated last year
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆70Updated 11 months ago
- TEspeX - pipeline for Transposable Elements expression quantification☆22Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- ☆60Updated 6 months ago
- Software for Quantifying Interspersed Repeat Expression☆64Updated 3 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Full-length transcriptome splicing and mutation analysis☆86Updated last year
- ☆53Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 6 months ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated 3 weeks ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated 2 weeks ago
- chia pet analysis software☆25Updated 7 years ago
- ☆74Updated 2 years ago
- IDR☆30Updated 2 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆78Updated 2 months ago
- Genomic Association Tester☆35Updated 2 years ago
- Comprehensive benchmark of structural variant callers☆48Updated 4 years ago
- Classify output of AmpliconArchitect to detect types of focal amplifications present☆21Updated this week
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆82Updated 11 months ago
- Battenberg R package for subclonal copynumber estimation☆95Updated last month
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago