☆18Feb 25, 2022Updated 4 years ago
Alternatives and similar repositories for LiRA
Users that are interested in LiRA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆23Jul 28, 2025Updated 11 months ago
- ☆15May 22, 2026Updated 2 months ago
- PTa Analysis TOolkit☆18Jun 9, 2026Updated last month
- WGS Pipeline☆13Jan 19, 2018Updated 8 years ago
- BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium☆11Jan 7, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- ☆13Aug 6, 2025Updated 11 months ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆10Jan 23, 2023Updated 3 years ago
- ☆35Jun 7, 2019Updated 7 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆162Oct 30, 2025Updated 8 months ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated 5 months ago
- Analysis of co-expression networks from RNA-seq data☆11Apr 6, 2017Updated 9 years ago
- Breast cancer risk prediction using genotyped data☆12Oct 11, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆10Dec 20, 2022Updated 3 years ago
- Base-wise aggregation and functional prediction for human non-coding regulatory variants☆15Dec 20, 2023Updated 2 years ago
- A simple Bisulfite FastQ Read Simulator (BiQRS)☆13Jun 11, 2026Updated last month
- SCCNV: a software tool for identifying copy number variation from single-cell whole-genome sequencing☆13Jul 21, 2020Updated 6 years ago
- Subtyping tool for multi-omic data☆14Jul 6, 2022Updated 4 years ago
- MTAE-based 5UTR design model☆10Jan 23, 2024Updated 2 years ago
- A comprehensive toolkit for mutational signature analysis☆42Jul 19, 2024Updated 2 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆61Jun 7, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- epigenome analysis to rank transcription factors☆15Dec 19, 2019Updated 6 years ago
- cEll tyPe enrIChment☆17Dec 11, 2022Updated 3 years ago
- This repository collects pipelines, codes, and some intermediate results for adult brain somatic mosaicism study.☆15Jun 14, 2025Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25May 2, 2018Updated 8 years ago
- For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics☆13Oct 1, 2024Updated last year
- Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end re…☆17Jan 23, 2017Updated 9 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13May 3, 2019Updated 7 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆18Apr 4, 2022Updated 4 years ago
- Collection of tools and resources for linked-reads☆13Jun 26, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- deTS☆18Apr 21, 2020Updated 6 years ago
- ☆14Dec 7, 2021Updated 4 years ago
- ☆10Nov 6, 2023Updated 2 years ago
- R markdown notebooks for the Tabula Muris network analysis in Iacono et al. (2019)☆12Jun 30, 2021Updated 5 years ago
- A python tool to detect internal tandem duplication with robust variant allele frequency estimation☆12Updated this week
- annotation database for human genetics, genomics and epigenomics☆21Jun 1, 2026Updated last month