An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data
☆18Feb 17, 2021Updated 5 years ago
Alternatives and similar repositories for scEpath
Users that are interested in scEpath are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆10Apr 16, 2020Updated 6 years ago
- ☆14Mar 11, 2022Updated 4 years ago
- Lung cancer 10X analysis☆11Dec 30, 2020Updated 5 years ago
- cross-species analysis of cell identities, markers and regulations☆13Jul 11, 2025Updated last year
- R package for integrating and comparing multiple single cell genomic datasets☆12Dec 27, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Predicted cell-cell interactions of the aging mouse brain☆21Sep 24, 2019Updated 6 years ago
- Assessing the purity of single cell population☆156Jun 3, 2022Updated 4 years ago
- ☆15Dec 9, 2019Updated 6 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Apr 21, 2025Updated last year
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20May 22, 2021Updated 5 years ago
- Data analysis pipeline for scNT-seq (single-cell metabolically labeled new RNA tagging sequencing)☆16Jun 9, 2026Updated 2 months ago
- ☆16Jul 9, 2024Updated 2 years ago
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Jul 2, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- CellDrift: temporal perturbation effects for single cell data☆13Dec 3, 2022Updated 3 years ago
- weighted indexes for clustering evaluation☆15Apr 18, 2020Updated 6 years ago
- ☆12Apr 2, 2021Updated 5 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆124Apr 26, 2025Updated last year
- Single-cell Consensus Clusters of Encoded Subspaces☆15Jul 27, 2026Updated last month
- ☆22Apr 27, 2023Updated 3 years ago
- Population balance analysis☆46Apr 25, 2019Updated 7 years ago
- ☆17Dec 18, 2023Updated 2 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆18Updated this week
- Identifying external communication signals using single-cell transcriptomics data☆22Jun 10, 2024Updated 2 years ago
- ☆22Dec 23, 2024Updated last year
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity (now archived). Pl…☆20May 13, 2026Updated 3 months ago
- Information-based dimensionality reduction☆30Dec 14, 2024Updated last year
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- ☆32May 11, 2026Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆45Oct 10, 2025Updated 10 months ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 3 years ago
- ☆11Dec 8, 2023Updated 2 years ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆30Mar 2, 2020Updated 6 years ago
- ☆10Nov 29, 2022Updated 3 years ago
- VennDetail: a bioconductor package for VennDiagram visualization and details extraction☆30Mar 18, 2026Updated 5 months ago
- Original materials for the "Introduction to Solving Biological Problems with Python" 2 days course☆10Jun 25, 2018Updated 8 years ago