Alternatives and similar repositories for fcswrite

Users that are interested in fcswrite are comparing it to the libraries listed below

• afrendeiro / toolkit
  A toolkit for NGS analysis with Python
  ☆14Updated 2 years ago
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆52Updated 8 months ago
• rajewsky-lab / spacemake
  ☆43Updated 3 weeks ago
• jmbreda / Sanity
  Filtering of Poison noise on a single-cell RNA-seq UMI count matrix
  ☆73Updated 2 weeks ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆68Updated 2 months ago
• cbg-ethz / SCICoNE
  Single-cell copy number calling and event history reconstruction.
  ☆23Updated 4 months ago
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆101Updated last year
• saketkc / pySCTransform
  Python package to perform normalization and variance-stabilization of single-cell data
  ☆23Updated 3 weeks ago
• ebi-gene-expression-group / scanpy-scripts
  Scripts for using scanpy
  ☆36Updated last month
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆55Updated 5 years ago
• wckdouglas / diffexpr
  Porting DESeq2 into python via rpy2
  ☆68Updated last year
• BuysDB / SingleCellMultiOmics
  Tools which deal with multiple single cell measurements
  ☆23Updated 5 months ago
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆96Updated last week
• aertslab / pycistarget
  pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …
  ☆17Updated 3 months ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆60Updated 11 months ago
• nf-core / spatialvi
  Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…
  ☆62Updated this week
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆45Updated last year
• lcmmichielsen / scHPL
  ☆35Updated 2 months ago
• BodenmillerGroup / imctools
  Tools to handle IMC data
  ☆23Updated 3 years ago
• AllonMKlein / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆85Updated 5 years ago
• lilab-bcb / harmony-pytorch
  ☆53Updated last month
• HYsxe / PRINT
  ☆35Updated 8 months ago
• cole-trapnell-lab / cicero-release
  ☆59Updated 8 months ago
• ShobiStassen / VIA
  trajectory inference
  ☆98Updated 3 months ago
• czbiohub-sf / cerebra
  A tool for fast and accurate summarizing of variant calling format (VCF) files
  ☆60Updated 2 years ago
• scverse / scanpy_usage
  Scanpy use cases.
  ☆85Updated 4 years ago
• nf-core / imcyto
  Image Mass Cytometry analysis pipeline
  ☆25Updated last week
• JCVenterInstitute / NSForest
  A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…
  ☆62Updated this week
• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆76Updated 2 years ago
• theislab / anndata2ri
  Convert between AnnData and SingleCellExperiment
  ☆132Updated last week