DC-analysis / fcswriteLinks
Python package for writing flow cytometry standard (.fcs) files
☆11Updated 3 months ago
Alternatives and similar repositories for fcswrite
Users that are interested in fcswrite are comparing it to the libraries listed below
Sorting:
- Porting DESeq2 into python via rpy2☆68Updated 2 years ago
- A toolkit for NGS analysis with Python☆14Updated 2 years ago
- Scripts for using scanpy☆36Updated 4 months ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆77Updated 2 months ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆100Updated 3 months ago
- Multi-omics factor analysis v2☆47Updated 8 months ago
- Python implementation of the Loom file format - http://loompy.org☆144Updated 7 months ago
- Scanpy use cases.☆85Updated 4 years ago
- ☆44Updated last week
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…☆65Updated last week
- Python package to perform normalization and variance-stabilization of single-cell data☆24Updated 3 months ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆64Updated last year
- ☆42Updated 11 months ago
- Normalization of RNA-seq gene expression☆91Updated last week
- Tools to handle IMC data☆23Updated 3 years ago
- ☆55Updated last month
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- Multimodal Data (.h5mu) implementation for Python☆99Updated last month
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated last week
- pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …☆17Updated 5 months ago
- An implementation of MNN (Mutual Nearest Neighbors) correct in python.☆75Updated 2 years ago
- Convert between AnnData and SingleCellExperiment☆137Updated last week
- Tools for working with BUS files☆100Updated last month
- Image Mass Cytometry analysis pipeline☆26Updated last month
- Material for lecture at the EMBL Single Cell Course 2016☆47Updated 9 years ago
- ☆68Updated 7 years ago
- Doublet detection in single-cell RNA-seq data.☆91Updated 5 months ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆74Updated 2 years ago
- Single-cell copy number calling and event history reconstruction.☆27Updated 6 months ago