DC-analysis / fcswriteLinks
Python package for writing flow cytometry standard (.fcs) files
☆11Updated 2 months ago
Alternatives and similar repositories for fcswrite
Users that are interested in fcswrite are comparing it to the libraries listed below
Sorting:
- Porting DESeq2 into python via rpy2☆67Updated 2 years ago
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆110Updated 2 months ago
- A toolkit for NGS analysis with Python☆14Updated 3 years ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆77Updated last month
- Batch balanced KNN☆177Updated 2 years ago
- Doublet detection in single-cell RNA-seq data.☆97Updated 11 months ago
- Convert between AnnData and SingleCellExperiment☆143Updated last week
- Python implementation of the Loom file format - http://loompy.org☆148Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆122Updated this week
- pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …☆18Updated 11 months ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆67Updated last month
- ☆44Updated last year
- ☆61Updated 7 months ago
- Scripts for using scanpy☆38Updated 2 months ago
- software to detect doublets☆95Updated last year
- Fast visualization tool for large-scale and high dimensional single-cell data☆77Updated last month
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing☆182Updated last week
- Scanpy use cases.☆88Updated 5 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆80Updated 2 years ago
- ☆48Updated this week
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆51Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- Multimodal Data (.h5mu) implementation for Python☆105Updated last month
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…☆70Updated last month
- data and model repository for single-cell data☆136Updated 2 years ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆68Updated 2 years ago
- ☆71Updated last year
- A simple pythonic interface to biomart.☆57Updated 5 years ago