SCCNV: a software tool for identifying copy number variation from single-cell whole-genome sequencing
☆13Jul 21, 2020Updated 5 years ago
Alternatives and similar repositories for SCCNV
Users that are interested in SCCNV are comparing it to the libraries listed below
Sorting:
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Nov 27, 2024Updated last year
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Oct 24, 2022Updated 3 years ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant…☆15Mar 26, 2024Updated last year
- Nextflow pipeline for BWA, BWA2 and STAR alignments☆12Jul 22, 2024Updated last year
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated 10 months ago
- Pipeline of tools to process raw fastq data and produce meaningful genomic data☆14Feb 20, 2020Updated 6 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Nov 1, 2024Updated last year
- ☆17Sep 28, 2022Updated 3 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Jul 28, 2025Updated 7 months ago
- ☆18Jan 30, 2023Updated 3 years ago
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆11Updated this week
- Marker gene selection from scRNA-seq data☆16Sep 15, 2020Updated 5 years ago
- ☆21Dec 23, 2024Updated last year
- plot genome alignment synteny☆21May 25, 2020Updated 5 years ago
- ASTRAL for PaRalogs and Orthologs☆22Sep 13, 2022Updated 3 years ago
- Toolkit for single-cell copy number analysis☆30Dec 15, 2025Updated 2 months ago
- A pipeline to investigate horizontal gene transfer from NGS data☆26Nov 20, 2025Updated 3 months ago
- Nextflow pipeline for Mutect2 somatic variant calling best practices☆23Jun 14, 2024Updated last year
- ☆24Oct 15, 2018Updated 7 years ago
- Trajectory Inference Based on SNP information.☆24Jun 19, 2024Updated last year
- Integrated workflow for SV calling from single-cell Strand-seq data☆26Feb 18, 2026Updated 2 weeks ago
- Single-cell copy number calling and event history reconstruction.☆28Dec 21, 2024Updated last year
- ☆21May 6, 2025Updated 9 months ago
- Automated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries☆12Jan 4, 2026Updated 2 months ago
- For those who have no previous coding background, and just starting to venture into Pyhton for analytics and some machine learning, this …☆13Oct 21, 2022Updated 3 years ago
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated last year
- ☆32Jul 29, 2025Updated 7 months ago
- ☆34Jun 7, 2019Updated 6 years ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- Scripts and utilities for analyzing tandem repeats (TRs).☆42Feb 11, 2026Updated 3 weeks ago
- ☆11Feb 2, 2026Updated last month
- Introduction to Python3☆11Oct 26, 2020Updated 5 years ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 7 years ago
- ☆10May 31, 2022Updated 3 years ago
- Annotate Olfactory receptor CDS from genome☆10Apr 29, 2023Updated 2 years ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆33Mar 10, 2023Updated 2 years ago
- ☆34Jun 12, 2019Updated 6 years ago
- Single cell RNA-seq analysis bundle☆37Sep 13, 2019Updated 6 years ago