SCCNV: a software tool for identifying copy number variation from single-cell whole-genome sequencing
☆13Jul 21, 2020Updated 6 years ago
Alternatives and similar repositories for SCCNV
Users that are interested in SCCNV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆39Nov 27, 2024Updated last year
- ☆11Sep 13, 2024Updated 2 years ago
- Single cell somatic genotyper☆10Sep 28, 2022Updated 4 years ago
- Variant sequence context analysis tool☆10Jul 5, 2024Updated 2 years ago
- Repository for Immune Atlas Research Consortium at MMRF for storing research project code☆14Oct 3, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A web app to compare single-cell annotations☆10Feb 17, 2025Updated last year
- Collection of standard analytical pipelines for genomic and transcriptomic data☆24Updated this week
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Oct 24, 2022Updated 4 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- ☆10Mar 6, 2025Updated last year
- BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium☆11Jan 7, 2024Updated 2 years ago
- ☆13Apr 16, 2026Updated 6 months ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated last year
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆12Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Pipeline of tools to process raw fastq data and produce meaningful genomic data☆14Feb 20, 2020Updated 6 years ago
- ☆19Jan 30, 2023Updated 3 years ago
- ☆24Oct 15, 2018Updated 8 years ago
- Nextflow pipeline for BWA, BWA2 and STAR alignments☆12Apr 10, 2026Updated 6 months ago
- ☆17Sep 28, 2022Updated 4 years ago
- MASCoTE (Multiple Allele-specific Simulation of Copy-number Tumor Evolution) is a simulation framework to generate sequencing reads with …☆13Dec 3, 2020Updated 5 years ago
- WGS Pipeline☆13Jan 19, 2018Updated 8 years ago
- Trajectory Inference Based on SNP information.☆24Jun 19, 2024Updated 2 years ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The snakemake workflow for whole-exome sequencing analysis and generating vcf files☆11Dec 17, 2022Updated 3 years ago
- ☆16Mar 8, 2024Updated 2 years ago
- ☆22Jan 16, 2026Updated 9 months ago
- Base-wise aggregation and functional prediction for human non-coding regulatory variants☆15Dec 20, 2023Updated 2 years ago
- ☆35Jun 7, 2019Updated 7 years ago
- Find CNVs in single cell sequencing data.☆22Apr 4, 2026Updated 6 months ago
- VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant…☆16Apr 15, 2026Updated 6 months ago
- Analysis of co-expression networks from RNA-seq data☆11Apr 6, 2017Updated 9 years ago
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆15Nov 1, 2024Updated 2 years ago
- Marker gene selection from scRNA-seq data☆16Sep 15, 2020Updated 6 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- Orthodox LaTeX and lilypond service texts and music☆16Sep 29, 2020Updated 6 years ago
- ☆23Dec 23, 2024Updated last year
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆34Mar 10, 2023Updated 3 years ago
- ☆18Feb 25, 2022Updated 4 years ago