SCCNV: a software tool for identifying copy number variation from single-cell whole-genome sequencing
☆13Jul 21, 2020Updated 5 years ago
Alternatives and similar repositories for SCCNV
Users that are interested in SCCNV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆37Nov 27, 2024Updated last year
- Collection of standard analytical pipelines for genomic and transcriptomic data☆17Apr 24, 2026Updated last week
- ☆17Sep 28, 2022Updated 3 years ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Oct 24, 2022Updated 3 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆18Jan 30, 2023Updated 3 years ago
- ☆24Oct 15, 2018Updated 7 years ago
- BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium☆11Jan 7, 2024Updated 2 years ago
- ☆34Jun 7, 2019Updated 6 years ago
- Pipeline of tools to process raw fastq data and produce meaningful genomic data☆14Feb 20, 2020Updated 6 years ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- Find CNVs in single cell sequencing data.☆19Apr 4, 2026Updated last month
- WGS Pipeline☆13Jan 19, 2018Updated 8 years ago
- Trajectory Inference Based on SNP information.☆24Jun 19, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Analysis of co-expression networks from RNA-seq data☆11Apr 6, 2017Updated 9 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆18Jul 28, 2025Updated 9 months ago
- Loads data from the police and shows it nicely☆10Oct 2, 2017Updated 8 years ago
- Nextflow pipeline for BWA, BWA2 and STAR alignments☆12Apr 10, 2026Updated 3 weeks ago
- VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant…☆15Apr 15, 2026Updated 2 weeks ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆15Nov 1, 2024Updated last year
- Marker gene selection from scRNA-seq data☆16Sep 15, 2020Updated 5 years ago
- Base-wise aggregation and functional prediction for human non-coding regulatory variants☆15Dec 20, 2023Updated 2 years ago
- ☆21Dec 23, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆18Feb 25, 2022Updated 4 years ago
- Jitterbug is a bioinformatic software that predicts insertion sites of transposable elements in a sample sequenced by short paired-end re…☆17Jan 23, 2017Updated 9 years ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆33Mar 10, 2023Updated 3 years ago
- Integrated workflow for SV calling from single-cell Strand-seq data☆26Apr 13, 2026Updated 3 weeks ago
- Visualization of LVZ police ticker☆14Updated this week
- deTS☆18Apr 21, 2020Updated 6 years ago
- ☆12Apr 21, 2023Updated 3 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated last month
- This repository is based on the book "Black Hat Python" contains code and resources related to the tools and scripts discussed in the boo…☆15May 6, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Orthodox LaTeX and lilypond service texts and music☆15Sep 29, 2020Updated 5 years ago
- Standalone Windows Application developed for print and manage local bank cheques easily.☆11Oct 2, 2017Updated 8 years ago
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆12Feb 27, 2026Updated 2 months ago
- ☆25Aug 5, 2025Updated 9 months ago
- ☆22Sep 1, 2022Updated 3 years ago
- plot genome alignment synteny☆20May 25, 2020Updated 5 years ago
- ☆34Jun 12, 2019Updated 6 years ago