biosinodx / SCCNVLinks
SCCNV: a software tool for identifying copy number variation from single-cell whole-genome sequencing
☆12Updated 5 years ago
Alternatives and similar repositories for SCCNV
Users that are interested in SCCNV are comparing it to the libraries listed below
Sorting:
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 9 months ago
- Nextflow pipeline for BWA, BWA2 and STAR alignments☆12Updated last year
- ☆12Updated 2 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆14Updated last month
- Suite of analysis tools for spatial total RNA-sequencing☆12Updated 2 years ago
- Micro DNA identification☆24Updated 4 years ago
- ☆18Updated 4 years ago
- ☆27Updated 3 years ago
- ☆15Updated last week
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆20Updated 3 weeks ago
- ☆19Updated 2 years ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14Updated 6 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 4 years ago
- GENome Organisation Visual Analytics☆16Updated 3 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆11Updated 4 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- ☆19Updated last year
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆23Updated 9 months ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- 🌓 Allele specific analyses across cell states and conditions☆10Updated 2 years ago
- ☆23Updated 4 years ago
- ☆17Updated 6 years ago
- ☆12Updated 4 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆41Updated last year