mafeiyang / ACTINNLinks
☆37Updated 4 years ago
Alternatives and similar repositories for ACTINN
Users that are interested in ACTINN are comparing it to the libraries listed below
Sorting:
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated last year
- ☆71Updated last year
- scRNA-seq cell type identification☆44Updated 6 years ago
- scWGCNA☆61Updated 3 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 7 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 6 years ago
- ☆46Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Identifying tumor cells at the single-cell level using machine learning☆49Updated last year
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 5 months ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- ☆53Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆73Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆81Updated 6 months ago
- Create cisTarget databases☆55Updated 7 months ago
- ☆57Updated 7 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- Gene expression deconvolution using dampened weighted least squares☆33Updated 5 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 8 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 9 months ago
- ☆34Updated 6 years ago
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆41Updated this week
- Estimate microRNA activity in single cells☆13Updated 3 years ago
- ☆61Updated 4 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- Functional Inference of Gene Regulation☆51Updated last year
- Draw phylogenetic trees of tumor evolution☆87Updated 2 years ago
- A portable and fast single cell type identifier☆63Updated 4 years ago