Molmed / checkQCLinks
CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
☆28Updated 2 weeks ago
Alternatives and similar repositories for checkQC
Users that are interested in checkQC are comparing it to the libraries listed below
Sorting:
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- A collection of modules and sub-workflows for Nextflow☆26Updated 3 weeks ago
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated 2 weeks ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last week
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆24Updated 5 months ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 6 months ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 6 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 7 years ago
- An awk-like VCF parser☆56Updated last year
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last month
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 10 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 4 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Params validation plugin for Nextflow pipelines☆48Updated 10 months ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- ☆37Updated 4 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 9 months ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 10 years ago