Molmed / checkQCLinks
CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
☆28Updated last month
Alternatives and similar repositories for checkQC
Users that are interested in checkQC are comparing it to the libraries listed below
Sorting:
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- conda recipes for genomic data☆85Updated 4 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated last month
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- ☆24Updated 6 years ago
- A web based tool to manage and automate the processing of publicly available datasets.☆40Updated 4 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 5 months ago
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated 2 months ago
- full taxonomer cython repository☆22Updated 5 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆31Updated 3 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Integrative analysis of structural variations.☆40Updated last year
- Variant caller GUI + genetic disease analysis☆22Updated 5 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- High-definition reconstruction of clonal composition from next-generation sequencing data☆41Updated 9 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆49Updated this week