Molmed / checkQCLinks
CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
☆28Updated last week
Alternatives and similar repositories for checkQC
Users that are interested in checkQC are comparing it to the libraries listed below
Sorting:
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- ☆25Updated 6 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- v2.x of the microassembly based somatic variant caller☆24Updated last month
- sort genomic data☆35Updated 5 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆36Updated 14 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆45Updated last month
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated last month
- A web based tool to manage and automate the processing of publicly available datasets.☆40Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated last month
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 10 years ago
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆24Updated 6 months ago
- Numerical Encoding for Human Genetic Variants☆41Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 11 months ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- A Snakefile to parallelize bwa.☆13Updated 11 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 4 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 5 months ago
- Genomic VCF to tab-separated values☆47Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆40Updated 4 years ago