CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
☆29Nov 27, 2025Updated 3 months ago
Alternatives and similar repositories for checkQC
Users that are interested in checkQC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- StackStorm packs to automate sequencing center operations☆10Dec 6, 2022Updated 3 years ago
- Parse Illumina sample sheets with Python☆50Mar 20, 2024Updated 2 years ago
- ☆11Jul 13, 2018Updated 7 years ago
- A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) and Proximity Network (PNA) assays…☆19Updated this week
- Web application to collect and visualise data across multiple MultiQC runs.☆95Dec 13, 2024Updated last year
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Dec 10, 2024Updated last year
- ☆13May 2, 2018Updated 7 years ago
- Gene orthologs for model organisms in a tidy data format☆14Sep 29, 2022Updated 3 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Jan 27, 2020Updated 6 years ago
- TheSparkBox is an all-in-one Spark deployment that you can use to fire up a local cluster.☆12Jun 26, 2018Updated 7 years ago
- Nextflow hackathon 2017 projects☆10Sep 28, 2017Updated 8 years ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆63Mar 17, 2026Updated last week
- ☆81Nov 30, 2018Updated 7 years ago
- Explore the cancer relevance of your gene list☆53Dec 17, 2025Updated 3 months ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Jun 13, 2025Updated 9 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- Web-based database system for flow cell management (incl. REST API)☆16Mar 7, 2024Updated 2 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- C++ Library to parse Illumina InterOp files☆82Dec 13, 2025Updated 3 months ago
- Streamable FASTA parser.☆14Nov 19, 2019Updated 6 years ago
- Classifier of pathogenic non-coding variants in Mendelian diseases☆11Feb 6, 2020Updated 6 years ago
- A simple fastp-MultiQC nextflow pipeline☆12Feb 2, 2023Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Apr 25, 2023Updated 2 years ago
- Bioinformatics tool outputs converter to JSON or YAML☆35Jun 11, 2025Updated 9 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated 5 months ago
- Smart VCF parser DSL☆83May 24, 2022Updated 3 years ago
- Heterogeneity-incorporating Workflow ApplicationMaster for YARN☆26Oct 31, 2017Updated 8 years ago
- ☆12Dec 8, 2021Updated 4 years ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Sep 17, 2023Updated 2 years ago
- TIDDIT - structural variant calling☆10Dec 8, 2025Updated 3 months ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 2 years ago
- Simple Utility providing Shell Access to all R Functions☆35Feb 28, 2021Updated 5 years ago
- Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm☆14Mar 10, 2026Updated 2 weeks ago
- Quality of RNA-Seq Toolset☆52Apr 9, 2019Updated 6 years ago
- Location for the LSF DRMAA API originally creaded by FedStage☆20Oct 11, 2023Updated 2 years ago
- exprAnalysis☆15Dec 19, 2016Updated 9 years ago
- ClusterScan, search for clusters of features in a given annotation.☆11Aug 26, 2021Updated 4 years ago
- Genomic VCF to tab-separated values☆48Mar 9, 2023Updated 3 years ago