nf-core / lncpipeLinks
UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets
☆34Updated 7 months ago
Alternatives and similar repositories for lncpipe
Users that are interested in lncpipe are comparing it to the libraries listed below
Sorting:
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Evolutionary Transcriptomics with R☆49Updated this week
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 6 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆33Updated 3 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- ☆38Updated 4 years ago
- Integrative analysis of structural variations.☆40Updated last year
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- R package for DNA methylation analysis☆19Updated last year
- Mapped QC analysis program☆44Updated 7 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- lncRNA-screen☆25Updated 8 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- BigWig and BAM utilities☆98Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆89Updated last year
- A catalogue of available long read sequencing data analysis tools☆80Updated last month
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Tools for analyzing DNA methylation data☆44Updated 2 weeks ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 7 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- ☆30Updated 4 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆66Updated last year
- Genomic Association Tester☆34Updated 2 years ago
- Adapters for trimming☆30Updated 6 years ago