UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets
☆33Oct 7, 2026Updated this week
Alternatives and similar repositories for lncpipe
Users that are interested in lncpipe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆82Oct 22, 2022Updated 3 years ago
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Oct 3, 2026Updated last week
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Jul 13, 2021Updated 5 years ago
- Nascent Transcription Processing Pipeline☆25Updated this week
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆13Oct 1, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- MNase-seq analysis pipeline using BWA and DANPOS2.☆13Feb 23, 2026Updated 7 months ago
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11Sep 11, 2026Updated last month
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 3 years ago
- lncRNA-screen☆25Apr 19, 2017Updated 9 years ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆56Updated this week
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆26Jul 28, 2026Updated 2 months ago
- k-mer similarity analysis pipeline☆24Updated this week
- A python package for the identification of lncRNA from the assembled novel transcripts☆17Oct 28, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆14Updated this week
- An analysis pipeline for Nanostring nCounter expression data.☆18Sep 11, 2026Updated last month
- A library for counting small kmer frequencies in nucleotide sequences.☆29Jul 7, 2026Updated 3 months ago
- Rscripts collection for ploting in daily research life☆10Jan 15, 2021Updated 5 years ago
- RNA-seq analysis pipeline for detection of gene-fusions☆174Sep 24, 2026Updated 2 weeks ago
- Functional Enrichment Analysis and Network Construction☆10May 13, 2020Updated 6 years ago
- Working on cotton resequencing☆11Jun 2, 2020Updated 6 years ago
- Demultiplexing pipeline for sequencing data☆61Updated this week
- MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis☆17Nov 7, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Sep 29, 2026Updated last week
- Sample-specific CircRNA Viewer☆12Aug 15, 2018Updated 8 years ago
- Precision HLA typing from next-generation sequencing data☆80Updated this week
- An R package for automatically aggregating and summarizing lncRNA analysis results.☆16Mar 5, 2019Updated 7 years ago
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.☆25Jul 28, 2026Updated 2 months ago
- Cookiecutter for snakemake slurm profile☆17Jul 22, 2023Updated 3 years ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆32Sep 15, 2023Updated 3 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 4 years ago
- Computes various SV statistics☆13Oct 12, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated last year
- UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies☆28Sep 1, 2026Updated last month
- An introductory course to eQTL analysis.☆10Jul 11, 2025Updated last year
- Proteomics label-free quantification (LFQ) analysis pipeline☆38Jan 13, 2025Updated last year
- ☆27Jul 26, 2026Updated 2 months ago
- BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.☆12Sep 7, 2022Updated 4 years ago
- A Python package with integrated lncRNA prediction methods☆13Feb 17, 2021Updated 5 years ago