Clinical-Genomics / fusion-reportLinks
Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.github.io/fusion-report/example/
☆28Updated 7 months ago
Alternatives and similar repositories for fusion-report
Users that are interested in fusion-report are comparing it to the libraries listed below
Sorting:
- ☆33Updated 3 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated last week
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- BigWig and BAM utilities☆100Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- ☆39Updated 4 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- QDNAseq.hg38: QDNAseq bin annotation for the human genome build hg38☆17Updated last month
- Mapped QC analysis program☆44Updated 7 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated 2 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 11 months ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- FusionInspector code☆58Updated 4 months ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- ☆26Updated last year
- QDNAseq package for Bioconductor☆54Updated last year
- ☆72Updated 2 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- Make rapid visualizations of RNA-seq data in R☆19Updated 3 months ago
- ☆36Updated 6 years ago
- Precision HLA typing from next-generation sequencing data☆76Updated last week
- Tumor Mutational Burden☆63Updated 5 months ago
- ☆18Updated 7 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆55Updated 2 months ago