Clinical-Genomics / fusion-report
Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.github.io/fusion-report/example/
☆26Updated 2 months ago
Alternatives and similar repositories for fusion-report:
Users that are interested in fusion-report are comparing it to the libraries listed below
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- ☆33Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated last month
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated last year
- Genomic Association Tester☆30Updated last year
- Make rapid visualizations of RNA-seq data in R☆19Updated 5 years ago
- ☆21Updated 2 months ago
- Filter and prioritize fusion calls☆20Updated 4 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- Tool for RNA-Seq analysis.☆38Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago
- QDNAseq bin annotation for hg38☆14Updated 2 years ago
- ☆23Updated 6 months ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- Genomic data interpretation and visualization Workshop☆19Updated last year
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 9 months ago
- ☆23Updated 2 months ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆30Updated 6 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Updated 6 years ago
- Third-generation fusion gene detection☆14Updated last year