Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.github.io/fusion-report/example/
☆28Jun 22, 2026Updated 2 weeks ago
Alternatives and similar repositories for fusion-report
Users that are interested in fusion-report are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNA-seq analysis pipeline for detection of gene-fusions☆174Jun 22, 2026Updated 2 weeks ago
- FusionInspector code☆62May 21, 2026Updated last month
- Finder of Somatic Fusion Genes in RNA-seq data☆152Apr 16, 2026Updated 2 months ago
- Filter and prioritize fusion calls☆20May 26, 2026Updated last month
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆60Apr 27, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline for generating RNAseq-based cancer patient reports☆14Updated this week
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆14Apr 9, 2022Updated 4 years ago
- Tutorial for STAR-Fusion, FusionInspector, and de novo reconstruction of fusion transcripts using Trinity☆14Nov 21, 2019Updated 6 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 4 years ago
- A simple observation count database☆11Jan 13, 2026Updated 5 months ago
- Python package to annotate and visualize gene fusions.☆67Apr 14, 2026Updated 2 months ago
- expressions on VCFs☆92Mar 17, 2026Updated 3 months ago
- Documentation and description of AWS iGenomes S3 resource.☆122May 29, 2026Updated last month
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Call regions of homozygosity and make tentative UPD calls☆12Jun 27, 2025Updated last year
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆33May 6, 2026Updated 2 months ago
- Scalable genomic analysis pipelines, written in WDL☆12Jun 2, 2026Updated last month
- Toolkit for benchmarking fusion transcript predictions☆19Dec 24, 2025Updated 6 months ago
- Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data☆18Nov 26, 2021Updated 4 years ago
- ☆33May 2, 2022Updated 4 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆132Oct 14, 2025Updated 8 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Jun 25, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- STAR-Fusion codebase☆254Apr 18, 2026Updated 2 months ago
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- data repo for fusions found in human genomes and transcriptomes☆10Jan 21, 2024Updated 2 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Jun 11, 2026Updated 3 weeks ago
- Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components☆12Apr 28, 2025Updated last year
- Integrative analysis of structural variations.☆41Dec 20, 2023Updated 2 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆163Feb 12, 2026Updated 4 months ago
- Microsatellite instability (MSI) detection for tumor only data.☆115Apr 23, 2024Updated 2 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Jun 13, 2022Updated 4 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆29Nov 27, 2025Updated 7 months ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Dec 13, 2024Updated last year
- Microsatellite Analysis for Normal-Tumor InStability☆78Jul 14, 2022Updated 3 years ago
- useful command-line tools written to showcase hts-nim☆50Nov 10, 2020Updated 5 years ago