nf-core / bamtofastq
Converts bam or cram files to fastq format and does quality control.
☆24Updated 3 weeks ago
Alternatives and similar repositories for bamtofastq:
Users that are interested in bamtofastq are comparing it to the libraries listed below
- Experimental features for Nextflow☆38Updated last month
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆27Updated 3 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆111Updated 2 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆96Updated last year
- ☆35Updated 3 weeks ago
- Tools to annotate genomes using long read transcriptomics data☆45Updated 4 years ago
- Somatic structural variant caller for long-read data☆60Updated this week
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆36Updated 3 weeks ago
- SV detection tool for nanopore sequence reads☆89Updated 5 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆94Updated last month
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆135Updated last month
- Plotting tools for nanopore methylation data☆90Updated 8 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- TIDDIT - structural variant calling☆74Updated last month
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- Tools for the analysis of structural variation in genomes☆78Updated 10 months ago
- A nextflow variant benchmarking pipeline - premature☆14Updated this week
- Grep for FASTQ files☆95Updated 3 weeks ago
- A set of workflows written in Nextflow for Genome Annotation.☆44Updated 7 months ago
- ☆48Updated 5 months ago
- GenMap - Fast and Exact Computation of Genome Mappability☆104Updated 8 months ago
- gatk4 RNA variant calling pipeline☆41Updated this week
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- Methylation Phasing for Nanopore Sequencing☆46Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆72Updated this week
- Toolkit for calling structural variants using short or long reads☆100Updated 3 weeks ago