nf-core / bamtofastq
Converts bam or cram files to fastq format and does quality control.
☆21Updated 3 months ago
Related projects: ⓘ
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆27Updated 4 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆43Updated 2 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 9 months ago
- ☆69Updated this week
- Comparison of multiple long read datasets☆103Updated 3 months ago
- Somatic structural variant caller for long-read data☆43Updated 3 weeks ago
- A small-RNA sequencing analysis pipeline☆72Updated this week
- Dfam Transposable Element Tools Docker container.☆82Updated this week
- Grep for FASTQ files☆90Updated 6 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆27Updated 2 weeks ago
- Plotting tools for nanopore methylation data☆90Updated 3 months ago
- SV detection tool for nanopore sequence reads☆88Updated 2 weeks ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated last year
- course about NGS data processing: genomics and transcriptomics☆33Updated 3 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆56Updated last week
- Tools to annotate genomes using long read transcriptomics data☆45Updated 3 years ago
- Software for Quantifying Interspersed Repeat Expression☆49Updated 2 years ago
- Simple bacterial assembly and annotation pipeline☆60Updated this week
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆124Updated 4 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆52Updated last month
- A tool for somatic structural variant calling using long reads☆99Updated this week
- Phased assembly variant caller☆87Updated this week
- Tools for the analysis of structural variation in genomes☆76Updated 5 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆78Updated 2 years ago
- ☆36Updated this week
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆55Updated 10 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆92Updated 8 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆79Updated last month
- Wally: Visualization of aligned sequencing reads and contigs☆106Updated 7 months ago
- PacBio BAM toolkit☆31Updated 9 months ago