Converts bam or cram files to fastq format and does quality control.
☆32Jul 24, 2026Updated 3 weeks ago
Alternatives and similar repositories for bamtofastq
Users that are interested in bamtofastq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆35Jul 28, 2026Updated 2 weeks ago
- Nextflow pipeline to convert VCF files into MAF files.☆10Dec 12, 2025Updated 8 months ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jul 28, 2026Updated 2 weeks ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Jul 28, 2026Updated 2 weeks ago
- a novel next-generation sequencing simulator using position and genomic contexts based error profiles☆13Dec 18, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Pipeline to fetch metadata and raw FastQ files from public databases☆199Updated this week
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- Precision HLA typing from next-generation sequencing data☆81Jul 31, 2026Updated 2 weeks ago
- Nanopore demultiplexing, QC and alignment pipeline☆228Jul 27, 2026Updated 2 weeks ago
- Call and score variants from WGS/WES of rare disease patients.☆122Updated this week
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Aug 3, 2026Updated last week
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆19Updated this week
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 8 years ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Nascent Transcription Processing Pipeline☆24Jul 27, 2026Updated 2 weeks ago
- SQL support plugin for Nextflow☆32Updated this week
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆18Jul 28, 2026Updated 2 weeks ago
- ☆13Updated this week
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11Jul 29, 2026Updated 2 weeks ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆592Updated this week
- StackStorm packs to automate sequencing center operations☆10Dec 6, 2022Updated 3 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ATAC-seq peak-calling and QC analysis pipeline☆226Jul 25, 2026Updated 2 weeks ago
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆16Aug 6, 2026Updated last week
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆95Jul 29, 2026Updated 2 weeks ago
- RNA-seq analysis pipeline for detection of gene-fusions☆174Jul 24, 2026Updated 3 weeks ago
- Simple bacterial assembly and annotation pipeline☆92Jul 29, 2026Updated 2 weeks ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆40Jul 28, 2026Updated 2 weeks ago
- A very simple BLAST filtering pipeline☆20Mar 28, 2014Updated 12 years ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 4 months ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆68Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Deep neural network learning to transform point clouds to their corresponding mesh☆28Feb 28, 2023Updated 3 years ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆57Updated this week
- Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…☆27Updated this week
- Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.☆19Jul 28, 2026Updated 2 weeks ago
- International BioHackathon Directory of Events, Projects and Communities☆12Jul 7, 2026Updated last month
- An analysis pipeline for Nanostring nCounter expression data.☆18Jul 28, 2026Updated 2 weeks ago
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆62Jul 27, 2026Updated 2 weeks ago