nf-core / referencesLinks
nf-core/references is a bioinformatics pipeline that build references, for multiple use cases
☆19Updated last week
Alternatives and similar repositories for references
Users that are interested in references are comparing it to the libraries listed below
Sorting:
- A VSCode extension pack for nf-core developers.☆15Updated 7 months ago
- Customer workshop materials☆18Updated 2 years ago
- Fast sequencing data quality metrics☆28Updated last month
- Fast FASTQ sample demultiplexing in Rust.☆66Updated 2 weeks ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 3 months ago
- Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆19Updated this week
- Nascent Transcription Processing Pipeline☆20Updated 2 weeks ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆25Updated 2 weeks ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 4 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated this week
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Updated 6 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 4 months ago
- Variant catalogue pipeline☆26Updated 6 months ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated last week
- Nextflow Tower CLI tool☆50Updated this week
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 2 weeks ago
- interactive plots for differential expression analysis☆34Updated 4 months ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 3 months ago
- ☆17Updated 2 months ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- Vim syntax highlighting for WDL☆20Updated 4 years ago
- ☆28Updated 4 months ago
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆28Updated 3 months ago