nf-core / referencesLinks
nf-core/references is a bioinformatics pipeline that build references, for multiple use cases
☆17Updated 3 weeks ago
Alternatives and similar repositories for references
Users that are interested in references are comparing it to the libraries listed below
Sorting:
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated last month
- Fast FASTQ sample demultiplexing in Rust.☆63Updated 2 months ago
- Customer workshop materials☆18Updated 2 years ago
- Fast sequencing data quality metrics☆27Updated 2 months ago
- k-mer similarity analysis pipeline☆22Updated last month
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 2 months ago
- A VSCode extension pack for nf-core developers.☆15Updated 5 months ago
- Variant catalogue pipeline☆25Updated 3 months ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 5 months ago
- Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆17Updated last month
- bedtools-like functionality for interval sets in rust☆52Updated this week
- ☆22Updated last year
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆24Updated last week
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆45Updated last month
- Docker containers for bioinformatics with a small footprint☆23Updated last year
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆34Updated last week
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 3 months ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- v2.x of the microassembly based somatic variant caller☆24Updated 3 weeks ago
- Nascent Transcription Processing Pipeline☆20Updated 3 weeks ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆40Updated 4 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- ☆25Updated last month
- Useful tools for working with Salmon output☆38Updated 5 years ago
- vembrane filters VCF records using python expressions☆61Updated this week
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago