Alternatives and similar repositories for references

Users that are interested in references are comparing it to the libraries listed below

• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated last week
• nf-core / tumourevo
  Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …
  ☆17Updated last month
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆62Updated last week
• seqeralabs / nf-training-advanced
  Customer workshop materials
  ☆18Updated 2 years ago
• nf-core / vscode-extensionpack
  A VSCode extension pack for nf-core developers.
  ☆15Updated 2 months ago
• snakemake-workflows / dna-seq-benchmark
  A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets
  ☆12Updated last week
• fulcrumgenomics / nf-dotenv
  Automatically source dotenv files into your Nextflow scope
  ☆9Updated last month
• nf-core / nascent
  Nascent Transcription Processing Pipeline
  ☆19Updated last week
• qbic-pipelines / rnadeseq
  Differential gene expression analysis and pathway analysis of RNAseq data
  ☆32Updated last week
• fulcrumgenomics / python-snakemake-template
  A template repository for Snakemake pipepline(s) and a python command-line toolkit.
  ☆28Updated 3 weeks ago
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆21Updated last month
• nf-core / seqinspector
  QC pipeline to inspect your sequences
  ☆12Updated this week
• nf-core / phaseimpute
  A bioinformatics pipeline to phase and impute genetic data
  ☆22Updated last month
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated this week
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆18Updated 6 years ago
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆22Updated this week
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 3 years ago
• Oshlack / Slinker
  Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.
  ☆19Updated 2 years ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆29Updated 2 weeks ago
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆58Updated this week
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆34Updated 5 months ago
• broadinstitute / vim-wdl
  Vim syntax highlighting for WDL
  ☆20Updated 3 years ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆19Updated last year
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 2 years ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated last month
• koesterlab / microphaser
  ☆12Updated last year
• nygenome / Lancet2
  v2.x of the microassembly based somatic variant caller
  ☆23Updated last month
• vicsanga / Postre
  POSTRE: Prediction Of STRuctural variant Effects
  ☆24Updated 3 months ago
• TrinityCTAT / CTAT-VirusIntegrationFinder
  ☆16Updated last year