Experimental plugin to integrate GPT like prompt into Nextflow
☆17Apr 15, 2024Updated 2 years ago
Alternatives and similar repositories for nf-gpt
Users that are interested in nf-gpt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 3 months ago
- A repo with just adapter sequences☆15Jul 7, 2025Updated 11 months ago
- Python-based framework for computational immunomics☆15Jun 11, 2026Updated 3 weeks ago
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆18Jun 3, 2025Updated last year
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆28Jun 23, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Influenza genome analysis Nextflow workflow☆26Jun 3, 2026Updated last month
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30May 17, 2026Updated last month
- Customer workshop materials☆19May 13, 2026Updated last month
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36May 29, 2026Updated last month
- Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆22Jun 8, 2026Updated 3 weeks ago
- An analysis pipeline for Nanostring nCounter expression data.☆18Apr 30, 2026Updated 2 months ago
- Nascent Transcription Processing Pipeline☆23Jun 25, 2026Updated last week
- nf-test utility functions☆12May 22, 2026Updated last month
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆52Jun 15, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A GitHub action to install Nextflow☆29Updated this week
- ☆17Sep 20, 2019Updated 6 years ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Updated this week
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 3 weeks ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆68Jun 27, 2026Updated last week
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 11 months ago
- Config files used to define parameters specific to compute environments at different Institutions☆110Jun 25, 2026Updated last week
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆36Jun 30, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated last year
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated last year
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆60Mar 23, 2023Updated 3 years ago
- ☆11Dec 24, 2024Updated last year
- snakemake-powered cli to download genomes using NCBI datasets☆15Aug 14, 2025Updated 10 months ago
- Testing building mulled containers for multi-requirement tools.☆84Updated this week
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆40Feb 20, 2026Updated 4 months ago
- ☆22Jun 3, 2026Updated last month
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year
- Precision HLA typing from next-generation sequencing data☆81Jun 18, 2026Updated 2 weeks ago
- ☆12Feb 15, 2023Updated 3 years ago
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated 2 years ago
- Python tools for proteogenomics analysis toolkit☆17May 23, 2026Updated last month
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆54May 7, 2026Updated last month
- whole genome MLST analysis☆53Jun 17, 2026Updated 2 weeks ago