Experimental plugin to integrate GPT like prompt into Nextflow
☆17Apr 15, 2024Updated 2 years ago
Alternatives and similar repositories for nf-gpt
Users that are interested in nf-gpt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 5 months ago
- A repo with just adapter sequences☆15Jul 7, 2025Updated last year
- Python-based framework for computational immunomics☆15Jun 11, 2026Updated 3 months ago
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆19Jul 28, 2026Updated last month
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆29Sep 16, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆31May 17, 2026Updated 4 months ago
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36Aug 10, 2026Updated last month
- Customer workshop materials☆19May 13, 2026Updated 4 months ago
- Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆22Updated this week
- An analysis pipeline for Nanostring nCounter expression data.☆18Sep 11, 2026Updated last week
- Nascent Transcription Processing Pipeline☆25Sep 1, 2026Updated 3 weeks ago
- nf-test utility functions☆13Sep 16, 2026Updated last week
- Influenza genome analysis Nextflow workflow☆28Jun 3, 2026Updated 3 months ago
- ☆17Sep 20, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆56Updated this week
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Jul 2, 2026Updated 2 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 3 months ago
- ☆11Dec 24, 2024Updated last year
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆27Sep 12, 2024Updated 2 years ago
- ☆23Updated this week
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆37Jun 30, 2024Updated 2 years ago
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 3 months ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆57Aug 24, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- Config files used to define parameters specific to compute environments at different Institutions☆112Updated this week
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆62Mar 23, 2023Updated 3 years ago
- A GitHub action to install Nextflow☆31Aug 20, 2026Updated last month
- Testing building mulled containers for multi-requirement tools.☆87Updated this week
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jul 28, 2026Updated last month
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated 2 years ago
- snakemake-powered cli to download genomes using NCBI datasets☆15Aug 14, 2025Updated last year
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Nextflow Tower CLI tool☆55Updated this week
- Precision HLA typing from next-generation sequencing data☆81Updated this week
- On-demand containers provisioning service☆60Updated this week
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year
- ☆12Feb 15, 2023Updated 3 years ago
- Bacterial surveillance pipeline.☆30Updated this week
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated 2 years ago