nextflow-io / nf-gptLinks
Experimental plugin to integrate GPT like prompt into Nextflow
☆15Updated last year
Alternatives and similar repositories for nf-gpt
Users that are interested in nf-gpt are comparing it to the libraries listed below
Sorting:
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated last week
- Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff☆51Updated last year
- Customer workshop materials☆18Updated 2 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆24Updated 3 weeks ago
- Snakemake workflow management system and CLI generation tool☆59Updated 2 months ago
- fastest GTF/GFF-to-BED converter chilling around☆25Updated 2 weeks ago
- A tool for simulating random mutations in any genome☆42Updated last year
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated last year
- A Generative Pre-Trained Transformer Package for Pangenomes☆52Updated 3 months ago
- ☆26Updated 2 years ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆30Updated last year
- A repo with just adapter sequences☆15Updated last month
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Fast sequencing data quality metrics☆27Updated 3 months ago
- Influenza genome analysis Nextflow workflow☆22Updated last month
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Updated 2 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated last year
- A Nextflow pipeline for running synteny analysis.☆15Updated 2 months ago
- sunburst plots for taxonomy - working to update Krona☆40Updated 2 weeks ago
- map Illumina metagenomes to genomes!☆39Updated last week
- Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3☆37Updated 3 years ago
- Reference-guided multiple sequence alignment of viral genomes☆71Updated 2 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆45Updated 2 months ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆21Updated 2 weeks ago
- k-mer similarity analysis pipeline☆23Updated last month
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆39Updated this week
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 2 weeks ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- ☆17Updated 2 years ago
- Remove human reads from a sequencing run☆40Updated last month