☆37May 11, 2026Updated 2 weeks ago
Alternatives and similar repositories for pannagram
Users that are interested in pannagram are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- que paquete☆10Jul 17, 2024Updated last year
- ☆11Sep 4, 2024Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆33Jun 12, 2025Updated 11 months ago
- Compare the quality of multiple genomes, along with their annotations.☆20May 7, 2026Updated 3 weeks ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24May 16, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆256May 20, 2026Updated last week
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- This repository contains all codes and scripts used in the Wild Rice Pangenome Project. The project aims to provide a comprehensive analy…☆28Apr 17, 2025Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆59Jan 7, 2026Updated 4 months ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 9 months ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- identify potential non-animal transcripts in animal transcriptomes☆13Nov 11, 2020Updated 5 years ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Apr 28, 2026Updated last month
- Toolkit for evolutionary analyses of linkage groups☆34Jul 17, 2024Updated last year
- A personal pipeline to calculate Ka,Ks and Ka/Ks using PAML-yn00 with YN method☆10Feb 26, 2025Updated last year
- A machine learning-based genotyping tool for structural variation in short reads☆26Sep 15, 2025Updated 8 months ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 10 months ago
- TD2☆40May 17, 2026Updated last week
- Methylation analysis pipeline for genome graph☆15May 25, 2025Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆37Apr 28, 2026Updated last month
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 8 months ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- ☆31Mar 27, 2024Updated 2 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated last month
- Whole Genome Alignment Tools☆225Nov 6, 2025Updated 6 months ago
- A pipeline creation tool using Snakemake☆13Apr 24, 2026Updated last month
- ☆10Mar 24, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆16Jul 29, 2023Updated 2 years ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 8 months ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆39Jun 3, 2025Updated 11 months ago
- Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments☆49Apr 1, 2026Updated last month
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆32Apr 11, 2026Updated last month
- High-precision TE Annotator☆158Dec 4, 2025Updated 5 months ago