☆38Oct 8, 2026Updated last week
Alternatives and similar repositories for pannagram
Users that are interested in pannagram are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated last year
- ☆10Sep 4, 2024Updated 2 years ago
- Detailed bioinformatics scripts and methods used in the Maize-Pan-genome paper.☆17Oct 8, 2025Updated last year
- ☆15May 3, 2023Updated 3 years ago
- que paquete☆10Jul 17, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- COsine SImilarity-based Genotyper using pangenomes☆40Updated this week
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆63Jul 5, 2026Updated 3 months ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆15Nov 1, 2024Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆17Sep 24, 2026Updated 3 weeks ago
- Yet another Hi-C scaffolding tool☆23Oct 23, 2024Updated last year
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆277Oct 6, 2026Updated last week
- A pipeline for genomic variant detection with genome assemblies at population scale☆43Jun 3, 2025Updated last year
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆53Jun 27, 2026Updated 3 months ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 5 months ago
- ☆23Oct 30, 2022Updated 3 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 9 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆37Sep 11, 2025Updated last year
- Homologizer: phasing gene copies into polyploid subgenomes☆13Feb 3, 2026Updated 8 months ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- ☆17Jul 29, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Codes for the lettuce resequencing project in 2020☆32Jun 28, 2021Updated 5 years ago
- Targeted genotyper for complex polymorphic genes☆50Updated this week
- This repository contains all codes and scripts used in the Wild Rice Pangenome Project. The project aims to provide a comprehensive analy…☆32Apr 17, 2025Updated last year
- FastK based version of Merqury☆33Jan 19, 2026Updated 8 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated 2 years ago
- Repository for scripts used in barley pan-genome graph construction with Minigraph☆15Oct 15, 2025Updated last year
- identify potential non-animal transcripts in animal transcriptomes☆13Nov 11, 2020Updated 5 years ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆139Sep 21, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆119Jul 23, 2024Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆31Mar 5, 2018Updated 8 years ago
- Toolkit for evolutionary analyses of linkage groups☆35Jul 17, 2024Updated 2 years ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆56Sep 29, 2026Updated 2 weeks ago
- We report a section-wide NLRome for the tuber-bearing section Petota, including the most important non-cereal food crop potato. Evolution…☆23Oct 31, 2025Updated 11 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆15Apr 28, 2026Updated 5 months ago
- A toolkit for identifying recombination and recombinant genotypes☆26Dec 3, 2025Updated 10 months ago