Alternatives and similar repositories for imputationserver2

Users that are interested in imputationserver2 are comparing it to the libraries listed below

• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆31Updated this week
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆53Updated 4 months ago
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆110Updated 3 weeks ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆45Updated 4 months ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆63Updated last month
• pachterlab / fastQpick
  ☆27Updated 5 months ago
• tkzeng / GeneBayes
  ☆25Updated 3 weeks ago
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆69Updated 3 months ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆43Updated last month
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆76Updated this week
• vicsanga / Postre
  POSTRE: Prediction Of STRuctural variant Effects
  ☆27Updated 4 months ago
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated 9 months ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆34Updated 2 years ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆96Updated last year
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆62Updated 2 weeks ago
• genepi / cloudgene3
  A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.
  ☆16Updated 3 months ago
• montilab / nf-gwas-pipeline
  A Nextflow Genome-Wide Association Study (GWAS) Pipeline
  ☆35Updated 3 weeks ago
• Oshlack / Clinker
  Gene Fusion Visualiser
  ☆51Updated 2 years ago
• liguowang / CrossMap
  CrossMap is a python program to lift over genome coordinates from one genome version to another.
  ☆85Updated 3 weeks ago
• 23andMe / phasedibd
  Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)
  ☆43Updated last year
• sigven / gvanno
  Generic human DNA variant annotation pipeline
  ☆58Updated last year
• fulcrumgenomics / python-snakemake-template
  A template repository for Snakemake pipepline(s) and a python command-line toolkit.
  ☆28Updated 2 months ago
• biocorecrg / BioNextflow
  A collection of modules and sub-workflows for Nextflow
  ☆27Updated this week
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆64Updated last week
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated 11 months ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 10 months ago
• macarthur-lab / tx_annotation
  Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…
  ☆33Updated 3 years ago
• nf-core / rnavar
  gatk4 RNA variant calling pipeline
  ☆50Updated last week
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆85Updated 6 years ago