Alternatives and similar repositories for imputationserver2

Users that are interested in imputationserver2 are comparing it to the libraries listed below

• tkzeng / GeneBayes
  ☆25Updated last week
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆68Updated 3 months ago
• pachterlab / fastQpick
  ☆26Updated 4 months ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆29Updated last week
• mulinlab / VarNote
  Fast and scalable variant annotation tool
  ☆30Updated 3 years ago
• macarthur-lab / tx_annotation
  Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…
  ☆33Updated 3 years ago
• Helix-Research-Lab / PGxPOP
  PGxPOP
  ☆17Updated 2 years ago
• nf-core / rnavar
  gatk4 RNA variant calling pipeline
  ☆48Updated 3 weeks ago
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆53Updated 3 weeks ago
• healthdisparities / rye
  Large scale ancestry inference from PCA data
  ☆23Updated 2 years ago
• atgu / hgdp_tgp
  ☆42Updated last month
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆73Updated 2 months ago
• mccoy-lab / MAGE
  Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…
  ☆36Updated 11 months ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• hmgu-itg / VCF-liftover
  Liftover VCF files
  ☆18Updated 8 years ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆40Updated 3 years ago
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 5 months ago
• lh3 / ref-gen
  Human reference genome analysis sets
  ☆53Updated 2 years ago
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆38Updated 10 months ago
• liguowang / CrossMap
  CrossMap is a python program to lift over genome coordinates from one genome version to another.
  ☆85Updated 4 months ago
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆39Updated 2 weeks ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆42Updated last week
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆38Updated 8 months ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆63Updated this week
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆105Updated this week
• alevar / ORFanage
  Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…
  ☆31Updated 2 weeks ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆82Updated last month
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆80Updated 4 months ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆44Updated 3 months ago
• crazyhottommy / pyflow-RNAseq
  RNAseq pipeline based on snakemake
  ☆26Updated 2 years ago