ncbi / ngsLinks
NGS Language Bindings
☆119Updated 2 years ago
Alternatives and similar repositories for ngs
Users that are interested in ngs are comparing it to the libraries listed below
Sorting:
- Scalable gVCF merging and joint variant calling for population sequencing projects☆174Updated last year
- A tool set for short variant discovery in genetic sequence data.☆203Updated 4 years ago
- Small utilities for working with fastq sequence files.☆123Updated 3 years ago
- Platypus Variant Caller☆108Updated last year
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆145Updated 9 years ago
- SRAToolkit has been REPLACED - see README☆37Updated 9 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆90Updated last year
- ☆82Updated 7 years ago
- ncbi-vdb☆92Updated this week
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Updated 2 months ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- ☆96Updated 3 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Updated 2 years ago
- Population-scale genotyping using pangenome graphs☆195Updated 11 months ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Updated 5 years ago
- Spliced read mapper for RNA-Seq☆92Updated 2 years ago
- CRAM format specification and java API for read data.☆59Updated 7 years ago
- An efficient FASTQ manipulation suite☆138Updated 5 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Updated 8 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Updated 3 years ago
- reference-guided aligner for next-generation sequencing technologies☆57Updated 9 years ago
- ☆91Updated 3 years ago
- A powerful toolset for genome arithmetic.☆142Updated 4 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated 3 weeks ago
- ABRA2☆95Updated 3 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆236Updated 4 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Updated 5 years ago
- Whole Genome Simulator for Next-Generation Sequencing☆101Updated 2 weeks ago
- Tools for processing and analyzing structural variants.☆155Updated 3 years ago
- Fast HLA type inference from whole-genome data☆141Updated 8 months ago