ncbi / ngs-tools
β106Updated last week
Alternatives and similar repositories for ngs-tools:
Users that are interested in ngs-tools are comparing it to the libraries listed below
- πScaffold genome sequence assemblies using linked or long read sequencing dataβ94Updated 5 months ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genβ¦β140Updated 5 months ago
- Tools for the analysis of structural variation in genomesβ78Updated last year
- SV caller for nanopore dataβ91Updated 4 years ago
- Comparison of multiple long read datasetsβ125Updated 2 weeks ago
- A tool to identify, orient, trim and rescue full length cDNA readsβ81Updated 2 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.β206Updated 2 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore readsβ101Updated last week
- Python programs for processing GFF3 filesβ95Updated last year
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore dataβ114Updated 3 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:β86Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.β160Updated last year
- Tools for manipulating sequence graphs in the GFA and rGFA formatsβ226Updated 8 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C dataβ184Updated 11 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing dataβ98Updated last year
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)β149Updated 2 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTagβ173Updated 3 years ago
- De novo transcriptome assembler for short readsβ62Updated 7 years ago
- pbsv - PacBio structural variant (SV) calling and analysis toolsβ142Updated last month
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing dataβ159Updated 7 months ago
- Bayesian genotyper for structural variantsβ131Updated 4 years ago
- Jasmine: SV Merging Across Samplesβ210Updated 3 months ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.β97Updated 10 months ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM filesβ129Updated 9 months ago
- Plotting tools for nanopore methylation dataβ93Updated 10 months ago
- Detecting contamination in NGS data and multi-species analysisβ73Updated 5 months ago
- phasing and Allele Specific Expression from RNA-seqβ112Updated 9 months ago
- reference-free transcriptome assembly for short and long readsβ103Updated last year
- SKESA assemblerβ116Updated 6 months ago
- A minimap2 frontend for PacBio native data formatsβ190Updated last month