ncbi / ngs-toolsLinks
☆107Updated 3 weeks ago
Alternatives and similar repositories for ngs-tools
Users that are interested in ngs-tools are comparing it to the libraries listed below
Sorting:
- Tools for the analysis of structural variation in genomes☆81Updated last year
- Python programs for processing GFF3 files☆102Updated 2 weeks ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- reference-free transcriptome assembly for short and long reads☆107Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆58Updated 2 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆106Updated last week
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Updated last year
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆109Updated last month
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated last month
- Coding Genome Reconstruction using Iso-Seq data☆62Updated 4 years ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- Genome inference from a population reference graph☆96Updated 9 months ago
- ☆49Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- RNA modifications detection from Nanopore dRNA-Seq data☆87Updated 3 months ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 3 years ago
- Plotting tools for nanopore methylation data☆95Updated 5 months ago
- SV caller for nanopore data☆92Updated 5 years ago
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆110Updated 2 weeks ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated 2 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆80Updated 5 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆100Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago