☆108Dec 3, 2025Updated 3 months ago
Alternatives and similar repositories for ngs-tools
Users that are interested in ngs-tools are comparing it to the libraries listed below
Sorting:
- NGS Language Bindings☆120Dec 6, 2023Updated 2 years ago
- ncbi-vdb☆93Updated this week
- ☆16Jan 21, 2024Updated 2 years ago
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 3 years ago
- Searching large collections of sequencing data with genome-scale queries☆16Feb 5, 2026Updated 3 weeks ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆244Jan 18, 2024Updated 2 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆111Oct 7, 2024Updated last year
- ☆13Jan 20, 2016Updated 10 years ago
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Jan 29, 2019Updated 7 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 5 years ago
- SRAToolkit has been REPLACED - see README☆38Aug 29, 2016Updated 9 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- taxonomic classifier based on the kraken2 algorithms and more☆46Dec 12, 2025Updated 2 months ago
- SKESA assembler☆124Oct 11, 2024Updated last year
- Supporting information of 'Single-cell RNA sequencing of a European and an African lymphoblastoid cell line'☆10Feb 27, 2020Updated 6 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Jun 14, 2016Updated 9 years ago
- Minimum Bait Cover Toolkit Syotti.☆13Jan 22, 2025Updated last year
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆42Sep 3, 2024Updated last year
- Using kallisto for metagenomic analysis☆49Jan 12, 2017Updated 9 years ago
- Truly parallel gzip decompression☆124Aug 20, 2019Updated 6 years ago
- The MARVEL assembler☆80Jul 7, 2023Updated 2 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Nov 9, 2024Updated last year
- Genome Annotation Library - A perl toolkit for working with SO compliant genome annotations☆17Feb 5, 2025Updated last year
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆25Dec 11, 2017Updated 8 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated last year
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 5 years ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆86Mar 7, 2024Updated last year
- interactive barplot for amplicon sequencing☆13Dec 5, 2024Updated last year
- stageR package☆13Feb 28, 2023Updated 3 years ago
- Shell bootloader for data science.☆12Updated this week
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Jul 24, 2025Updated 7 months ago
- memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping☆63Jan 22, 2026Updated last month
- Rapid determination of appropriate reference genomes.☆100Jan 22, 2025Updated last year
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆32Feb 20, 2018Updated 8 years ago
- AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and p…☆351Feb 24, 2026Updated last week
- variant integration methods for the 1000 Genomes Project☆21Jan 16, 2018Updated 8 years ago