nmdp-bioinformatics / ngsLinks
Next generation sequencing (NGS/HTS) tools.
☆19Updated last year
Alternatives and similar repositories for ngs
Users that are interested in ngs are comparing it to the libraries listed below
Sorting:
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- ☆15Updated 5 months ago
- Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis☆18Updated 2 years ago
- Benchmarking toolkit for variant calling☆48Updated 4 years ago
- Tools for bam file processing☆55Updated 10 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Updated last year
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Updated 6 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆32Updated 2 weeks ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- ☆36Updated 5 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Convert CWL to WDL☆17Updated 8 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 9 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- ☆27Updated 2 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 11 months ago
- Allele frequency filtering for Mendelian variant discovery☆18Updated 8 years ago
- ☆11Updated 7 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago