nmdp-bioinformatics / ngs
Next generation sequencing (NGS/HTS) tools.
☆18Updated 10 months ago
Related projects ⓘ
Alternatives and complementary repositories for ngs
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis☆18Updated 2 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Consensus assembly and variant calling workflow.☆12Updated 9 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 3 months ago
- The gkno launcher for executing tools or pipelines☆32Updated 7 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆42Updated 3 years ago
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆38Updated 7 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆28Updated 3 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- ☆26Updated 3 years ago
- A python script used to annotate genomic intervals.☆18Updated 4 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆20Updated 4 years ago
- Tools for bam file processing☆55Updated 9 years ago
- Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium☆11Updated last year
- A collection of utilities for working with next generation (MPS) sequencing data in Groovy☆13Updated last month
- a string to graph aligner☆41Updated 8 years ago
- ☆13Updated 7 years ago
- ☆12Updated 4 years ago
- Population Reference Graphs for the HLA and MHC.☆34Updated 5 years ago
- Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data☆10Updated 5 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- A Teaching Engine for Genomics☆11Updated 3 years ago