nmdp-bioinformatics / ngs
Next generation sequencing (NGS/HTS) tools.
☆18Updated last year
Alternatives and similar repositories for ngs:
Users that are interested in ngs are comparing it to the libraries listed below
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Consensus assembly and variant calling workflow.☆12Updated 9 years ago
- Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis☆18Updated 2 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- A python script used to annotate genomic intervals.☆18Updated 4 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF☆20Updated 4 years ago
- Tools for producing pseudo-cgh of next-generation sequencing data☆17Updated 8 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆35Updated 11 months ago
- Predicting oncogenic potential of gene fusions☆12Updated 9 years ago
- ☆37Updated 4 years ago
- ☆20Updated 8 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆42Updated 3 years ago
- ☆13Updated 7 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- command lines tool to annotate miRNAs with a standard mirna/isomir naming☆18Updated 4 months ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 7 months ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- ☆11Updated 6 years ago
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Updated last year
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- GEMTools main repository☆17Updated 2 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆22Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago