nmdp-bioinformatics / ngs
Next generation sequencing (NGS/HTS) tools.
☆19Updated last year
Alternatives and similar repositories for ngs:
Users that are interested in ngs are comparing it to the libraries listed below
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis☆18Updated 2 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- ☆37Updated 4 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- ☆26Updated 3 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 9 months ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Consensus assembly and variant calling workflow.☆12Updated 9 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆43Updated 5 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- ☆20Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Updated 6 years ago
- ☆9Updated 8 years ago
- ☆13Updated 7 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- Allele frequency filter app☆14Updated 3 years ago
- a string to graph aligner☆41Updated 8 years ago