nmdp-bioinformatics / ngsLinks
Next generation sequencing (NGS/HTS) tools.
☆19Updated last year
Alternatives and similar repositories for ngs
Users that are interested in ngs are comparing it to the libraries listed below
Sorting:
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Updated 3 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis☆18Updated 2 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline☆33Updated 7 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- Analysis from kallisto paper☆32Updated 9 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- CRAM format specification and java API for read data.☆60Updated 6 years ago
- Import a CWL workflow specification to Nextflow script (experimental)☆27Updated 6 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 8 years ago
- ☆37Updated 4 years ago
- ☆20Updated 8 years ago
- GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF☆20Updated 4 years ago
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Updated last year
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 6 years ago