Antibiotic resistance predictions in minutes on a laptop
☆50Mar 7, 2019Updated 7 years ago
Alternatives and similar repositories for Mykrobe-predictor
Users that are interested in Mykrobe-predictor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Antibiotic resistance prediction in minutes☆115Mar 27, 2026Updated last month
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 3 months ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Sep 7, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code for doing MIC predictions on genomes☆42Dec 5, 2019Updated 6 years ago
- "Reads to report" for public health and clinical microbiology☆143Dec 9, 2025Updated 4 months ago
- Variant call adjudication☆17Jun 13, 2024Updated last year
- Predict MLST directly from uncorrected long reads☆27Oct 31, 2025Updated 6 months ago
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 3 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- A list of weak Bacterial assemblies in GenBank☆18Aug 3, 2017Updated 8 years ago
- Whole genome focused array SNP typer☆14Feb 2, 2026Updated 3 months ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆124Aug 24, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆66May 11, 2020Updated 5 years ago
- Create a tree using Mash distances☆188Oct 24, 2023Updated 2 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- A public repository for collective curation of antimicrobial resistance (AMR) genes and mutations. Submit, discuss, and resolve AMR curat…☆63Sep 23, 2025Updated 7 months ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 8 years ago
- Antimicrobial Resistance Identification By Assembly☆187Oct 12, 2023Updated 2 years ago
- Pipeline to generate NGS reads from a phylogeny☆39Sep 13, 2022Updated 3 years ago
- Fast genome and metagenome distance estimation using MinHash☆441Sep 19, 2025Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A tool for merging large BWTs☆24Nov 26, 2020Updated 5 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Feb 18, 2020Updated 6 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- Tool for visualising assemblies.☆17Sep 15, 2015Updated 10 years ago
- Disty McMatrixface - compute a distance matrix from a core genome alignment file☆15Mar 15, 2023Updated 3 years ago
- Northern Arizona SNP Pipeline☆20Oct 29, 2024Updated last year
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- Bacterial phylogenetics in BEAST 2.☆18Mar 30, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ♥ Efficient Estimation of Evolutionary Distances☆47Feb 15, 2026Updated 2 months ago
- ☆18Jun 11, 2024Updated last year
- An Oxford Nanopore Basecaller☆70Sep 4, 2021Updated 4 years ago
- Sequential Tree Sampler for online phylogenetics☆16Mar 19, 2019Updated 7 years ago
- Software for nanopore data analysis☆29Sep 10, 2014Updated 11 years ago
- Genomic Assemblies Merger for NGS☆26Nov 10, 2023Updated 2 years ago
- Compressive Read-mapping Accelerator☆14Sep 7, 2016Updated 9 years ago