Alternatives and similar repositories for isaac_aligner

Users that are interested in isaac_aligner are comparing it to the libraries listed below

• sequencing / isaac_variant_caller
  This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka
  ☆37Updated 8 years ago
• gkno / gkno_launcher
  The gkno launcher for executing tools or pipelines
  ☆31Updated 8 years ago
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆60Updated 6 years ago
• dnanexus-archive / samtools
  ☆30Updated 8 years ago
• lh3 / fermi
  A WGS de novo assembler based on the FMD-index for large genomes
  ☆74Updated 11 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• iobio / minion
  Server wrapper that turns command line tools into web services
  ☆61Updated 6 years ago
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 7 years ago
• wanpinglee / MOSAIK
  reference-guided aligner for next-generation sequencing technologies
  ☆55Updated 8 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 4 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆84Updated 7 years ago
• quinlan-lab / vcftidy
  normalize, left-align, trim, validate and clean VCF files
  ☆20Updated 9 years ago
• mourisl / Lighter
  Fast and memory-efficient sequencing error corrector
  ☆93Updated last year
• bcbio / bcbio-nextgen-vm
  Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
  ☆65Updated 5 years ago
• brentp / hts-python
  pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)
  ☆49Updated 8 years ago
• lh3 / fermi-lite
  Standalone C library for assembling Illumina short reads in small regions
  ☆72Updated 2 years ago
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• opencb / hpg-aligner
  HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
  ☆34Updated 7 years ago
• boutroslab / cld
  A software for the multispecies design of CRISPR/Cas9 libraries
  ☆35Updated 2 years ago
• broadinstitute / gatk-protected
  Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead
  ☆32Updated 7 years ago
• mateidavid / fast5
  A C++ header-only library for reading Oxford Nanopore Fast5 files
  ☆53Updated 2 years ago
• ngsutils / ngsutils
  Tools for next-generation sequencing analysis
  ☆88Updated 5 years ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 7 years ago
• PriceLab / snapr
  SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis
  ☆25Updated 10 years ago
• lh3 / fermikit
  De novo assembly based variant calling pipeline for Illumina short reads
  ☆108Updated 4 years ago
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated 3 months ago
• amplab / smash
  Benchmarking toolkit for variant calling
  ☆47Updated 4 years ago
• BauerLab / ngsane
  Analysis Framework for Biological Data from High Throughput Experiments
  ☆34Updated 8 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago