sequencing / isaac_alignerLinks
Isaac Genome Alignment Software
☆36Updated 10 years ago
Alternatives and similar repositories for isaac_aligner
Users that are interested in isaac_aligner are comparing it to the libraries listed below
Sorting:
- This project is deprecated, please see strelka2 at https://github.com/Illumina/strelka☆37Updated 8 years ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- CRAM format specification and java API for read data.☆60Updated 6 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago
- A genotype query interface.☆136Updated 4 years ago
- reference-guided aligner for next-generation sequencing technologies☆55Updated 8 years ago
- NGS Language Bindings☆119Updated last year
- Tools for early stage alignment file processing☆95Updated 6 years ago
- A WGS de novo assembler based on the FMD-index for large genomes☆74Updated 11 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Updated 5 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)☆86Updated 8 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆86Updated 10 months ago
- Tools for bam file processing☆55Updated 10 years ago
- GenomicsDB☆111Updated 2 years ago
- Server wrapper that turns command line tools into web services☆60Updated 7 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- Toolkit to analyze genomic variation data, built on the GATK with Clojure☆66Updated 9 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆32Updated 7 years ago
- Utilities to create and analyze gVCF files☆38Updated 8 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated 2 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆59Updated this week
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- Fast and memory-efficient sequencing error corrector☆93Updated last year
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆98Updated 7 years ago
- Official code repository for GATK versions 1.0 through 3.7 (full licensed package). For GATK 4 code, see the https://github.com/broadinst…☆143Updated 6 years ago