relipmoc / skewer

Related projects ⓘ

Alternatives and complementary repositories for skewer

• arq5x / bedtools-protocols
  ☆78Updated 10 years ago
• Oshlack / Lace
  Building SuperTranscripts: A linear representation of transcriptome data
  ☆67Updated 3 years ago
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆46Updated last year
• Illumina / Pisces
  Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.
  ☆96Updated 2 years ago
• parklab / bamsnap
  ☆111Updated 2 weeks ago
• lh3 / bfc
  High-performance error correction for Illumina resequencing data
  ☆69Updated 8 years ago
• hartleys / QoRTs
  Quality of RNA-Seq Toolset
  ☆52Updated 5 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆65Updated 3 weeks ago
• dnanexus-archive / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆102Updated 4 years ago
• Oshlack / Corset
  Software for clustering de novo assembled transcripts and counting overlapping reads
  ☆68Updated 2 years ago
• svviz / svviz
  Read visualizer for structural variants
  ☆81Updated 6 years ago
• ExpressionAnalysis / ea-utils
  Automatically exported from code.google.com/p/ea-utils
  ☆95Updated last year
• walaj / VariantBam
  Filtering and profiling of next-generational sequencing data using region-specific rules
  ☆74Updated last year
• tderrien / FEELnc
  FEELnc : FlExible Extraction of LncRNA
  ☆82Updated 2 months ago
• 10XGenomics / supernova
  10x Genomics Linked-Read Diploid De Novo Assembler
  ☆64Updated 5 years ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 4 years ago
• nanoporetech / wub
  Tools and software library developed by the ONT Applications group
  ☆62Updated 3 years ago
• bahlolab / bioinfotools
  Documenting usage and experience with bioinformatic tools
  ☆40Updated 9 years ago
• geocarvalho / sv-cnv-studies
  Relevant papers for CNV and SV approaches
  ☆94Updated 2 weeks ago
• cc2qe / vawk
  An awk-like VCF parser
  ☆55Updated 10 months ago
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆145Updated 3 weeks ago
• GenomiqueENS / dockerfiles
  ☆82Updated 2 years ago
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆94Updated 6 months ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆92Updated 7 months ago
• compbiocore / VariantVisualization.jl
  Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
  ☆85Updated last year
• CSB5 / lofreq
  LoFreq Star: Sensitive variant calling from sequencing data
  ☆100Updated 2 years ago
• PapenfussLab / StructuralVariantAnnotation
  R package designed to simplify structural variant analysis
  ☆70Updated 2 years ago
• zstephens / neat-genreads
  NEAT read simulation tools
  ☆95Updated 2 years ago