relipmoc / skewer
☆94Updated 2 years ago
Alternatives and similar repositories for skewer:
Users that are interested in skewer are comparing it to the libraries listed below
- Maximum likelihood demultiplexing☆46Updated last month
- ☆78Updated 11 years ago
- An awk-like VCF parser☆56Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆97Updated 2 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆104Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆76Updated last year
- SV caller for nanopore data☆91Updated 4 years ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 9 months ago
- Structural Variant Index☆72Updated 3 months ago
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆111Updated last week
- Same species annotation lift over pipeline.☆96Updated last year
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆113Updated 3 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 weeks ago
- ☆119Updated 4 months ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆82Updated 5 months ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Tools and software library developed by the ONT Applications group☆62Updated 4 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆89Updated 3 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- UCSC Nanopore☆43Updated 5 years ago
- ABRA2☆92Updated 2 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆103Updated 2 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆67Updated 6 months ago