Alternatives and similar repositories for ncbi-vdb

Users that are interested in ncbi-vdb are comparing it to the libraries listed below

• ncbi / ngs
  NGS Language Bindings
  ☆119Updated last year
• ncbi / ngs-tools
  ☆107Updated 2 weeks ago
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆83Updated 3 weeks ago
• ncbi / magicblast
  ☆37Updated 5 months ago
• NCBI-Hackathons / Community_Software_Tools_for_NGS
  ☆63Updated 9 years ago
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆103Updated last month
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆98Updated 2 years ago
• ncbi / sratoolkit
  SRAToolkit has been REPLACED - see README
  ☆39Updated 9 years ago
• ncbi / dbvar
  dbVar
  ☆41Updated 3 years ago
• broadinstitute / long-read-pipelines
  Long read production pipelines
  ☆148Updated last week
• tfwillems / HipSTR
  Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
  ☆99Updated 2 years ago
• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆166Updated last year
• StevenWingett / FastQ-Screen
  Detecting contamination in NGS data and multi-species analysis
  ☆78Updated 10 months ago
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated last year
• johandahlberg / awesome-10x-genomics
  List of tools and resources related to the 10x Genomics GEMCode/Chromium system
  ☆85Updated 6 years ago
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆99Updated last year
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆89Updated 11 months ago
• nunofonseca / irap
  integrated RNA-seq Analysis Pipeline
  ☆83Updated 6 years ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated last month
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆84Updated last month
• GMOD / Apollo
  Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
  ☆137Updated 3 months ago
• Ensembl / VEP_plugins
  Plugins for the Ensembl Variant Effect Predictor (VEP)
  ☆157Updated 3 weeks ago
• genome / analysis-workflows
  Open workflow definitions for genomic analysis from MGI at WUSM.
  ☆104Updated 2 months ago
• gt1 / biobambam2
  Tools for early stage alignment file processing
  ☆95Updated 6 years ago
• DecodeGenetics / graphtyper
  Population-scale genotyping using pangenome graphs
  ☆190Updated 8 months ago
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• mitenjain / nanopore
  UCSC Nanopore group's software pipeline for reference-based sequence analysis
  ☆55Updated 9 years ago
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆106Updated 2 months ago
• konradjk / exac_browser
  Browser for ExAC consortium data
  ☆106Updated 3 years ago
• gatk-workflows / broad-prod-wgs-germline-snps-indels
  Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…
  ☆56Updated 5 years ago