Alternatives and similar repositories for ncbi-vdb:

Users that are interested in ncbi-vdb are comparing it to the libraries listed below

• ncbi / ngs
  NGS Language Bindings
  ☆119Updated last year
• ncbi / ngs-tools
  ☆106Updated last week
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆82Updated last month
• Ensembl / ensembl-pipeline
  *DEPRECATED* Job management for the Ensembl Genebuild pipeline
  ☆61Updated last year
• NCBI-Hackathons / Community_Software_Tools_for_NGS
  ☆62Updated 8 years ago
• hall-lab / svtools
  Tools for processing and analyzing structural variants.
  ☆150Updated 2 years ago
• nunofonseca / irap
  integrated RNA-seq Analysis Pipeline
  ☆85Updated 6 years ago
• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆156Updated 11 months ago
• ewels / clusterflow
  A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.
  ☆97Updated last year
• Ensembl / VEP_plugins
  Plugins for the Ensembl Variant Effect Predictor (VEP)
  ☆144Updated last week
• konradjk / exac_browser
  Browser for ExAC consortium data
  ☆106Updated 3 years ago
• bioconda / bioconda-utils
  Utilities for building and managing bioconda recipes
  ☆99Updated this week
• OpenGene / GeneFuse
  Gene fusion detection and visualization
  ☆122Updated 3 years ago
• atks / vt
  A tool set for short variant discovery in genetic sequence data.
  ☆196Updated 3 years ago
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• shenwei356 / bio_scripts
  Practical, reusable scripts for bioinformatics
  ☆98Updated 6 years ago
• AstraZeneca-NGS / VarDict
  VarDict
  ☆194Updated last year
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated 8 months ago
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆82Updated 5 months ago
• ncbi / magicblast
  ☆36Updated last year
• schatzlab / genomescope
  Fast genome analysis from unassembled short reads
  ☆284Updated 11 months ago
• alyssafrazee / ballgown
  Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.
  ☆145Updated 3 years ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆96Updated 11 months ago
• alimanfoo / pysamstats
  A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …
  ☆194Updated 3 weeks ago
• hall-lab / svtyper
  Bayesian genotyper for structural variants
  ☆128Updated 4 years ago
• genome / breakdancer
  SV detection from paired end reads mapping
  ☆117Updated 5 years ago
• genome / bam-readcount
  Count bases in BAM/CRAM files
  ☆314Updated 3 years ago
• ExpressionAnalysis / ea-utils
  Automatically exported from code.google.com/p/ea-utils
  ☆96Updated last year
• DecodeGenetics / graphtyper
  Population-scale genotyping using pangenome graphs
  ☆179Updated 2 months ago
• gear-genomics / tracy
  Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
  ☆107Updated 2 weeks ago