ncbi / sra-tools
SRA Tools
☆1,191Updated this week
Alternatives and similar repositories for sra-tools:
Users that are interested in sra-tools are comparing it to the libraries listed below
- A quality control analysis tool for high throughput sequencing data☆488Updated last year
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,280Updated last week
- bedtools - the swiss army knife for genome arithmetic☆971Updated 2 weeks ago
- MACS -- Model-based Analysis of ChIP-Seq☆727Updated last month
- SPAdes Genome Assembler☆798Updated last week
- Trinity RNA-Seq de novo transcriptome assembly☆852Updated last month
- python module to plot beautiful and highly customizable genome browser tracks☆797Updated 8 months ago
- Graph-based alignment (Hierarchical Graph FM index)☆496Updated 4 months ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆796Updated 9 months ago
- Rapid prokaryotic genome annotation☆882Updated 11 months ago
- Tools to process and analyze deep sequencing data.☆706Updated this week
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,035Updated 4 months ago
- The second version of the Kraken taxonomic sequence classification system☆766Updated last week
- The next version of bwa-mem☆744Updated 7 months ago
- Fast genome-wide functional annotation through orthology assignment☆597Updated 10 months ago
- Near-optimal RNA-Seq quantification☆673Updated 3 months ago
- Scripts to download genomes from the NCBI FTP servers☆993Updated 7 months ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆811Updated last month
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆493Updated 2 weeks ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆817Updated 7 months ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆999Updated last week
- Phylogenetic orthology inference for comparative genomics☆747Updated 5 months ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆431Updated last year
- A fast and sensitive gapped read aligner☆699Updated 3 months ago
- Genome-scale protein function classification☆320Updated this week
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆433Updated this week
- Toolkit for processing sequences in FASTA/Q formats☆1,440Updated 7 months ago
- Bioinformatics code libraries and scripts☆519Updated last month
- hybrid assembly pipeline for bacterial genomes☆587Updated 8 months ago
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆414Updated 2 months ago