ryanlayer / gqt
A genotype query interface.
☆134Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for gqt
- A tool set for short variant discovery in genetic sequence data.☆192Updated 3 years ago
- ☆78Updated 10 years ago
- An awk-like VCF parser☆55Updated 10 months ago
- Flexible genotype query among 30,000+ samples whole-genome☆96Updated 5 years ago
- ☆81Updated 5 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆107Updated 3 years ago
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago
- Bayesian genotyper for structural variants☆126Updated 3 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- NEAT read simulation tools☆95Updated 2 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆101Updated 3 years ago
- ☆82Updated 2 years ago
- ☆95Updated 2 years ago
- High-performance error correction for Illumina resequencing data☆69Updated 8 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆89Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Relevant papers for CNV and SV approaches☆94Updated 2 weeks ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆94Updated 6 months ago
- ABRA2☆91Updated last year
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- VarDict☆187Updated 10 months ago
- Quality of RNA-Seq Toolset☆52Updated 5 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆64Updated 5 years ago
- A tool to benchmark mappers and different parameters within minutes☆43Updated 5 years ago
- Tools for early stage alignment file processing☆93Updated 5 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆85Updated last year
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 5 months ago
- Very simple, pure python, BAM file reader☆79Updated 5 years ago
- BigWig and BAM utilities☆92Updated 7 months ago
- Read visualizer for structural variants☆81Updated 6 years ago