A genotype query interface.
☆136Mar 29, 2021Updated 4 years ago
Alternatives and similar repositories for gqt
Users that are interested in gqt are comparing it to the libraries listed below
Sorting:
- Flexible genotype query among 30,000+ samples whole-genome☆94Sep 4, 2019Updated 6 years ago
- A tool set for short variant discovery in genetic sequence data.☆204May 4, 2021Updated 4 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆399Aug 30, 2025Updated 6 months ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 7 years ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 8 years ago
- cython + htslib == fast VCF and BCF processing☆435Feb 23, 2026Updated 3 weeks ago
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Jul 6, 2022Updated 3 years ago
- Ancestry and Kinship Tools☆70Nov 16, 2022Updated 3 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 11 years ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆225Sep 18, 2025Updated 6 months ago
- Utilities to create and analyze gVCF files☆38Mar 21, 2017Updated 8 years ago
- Read alignment with a multi-genome reference☆23Jan 14, 2020Updated 6 years ago
- A GA4GH Draft Beacon implementation☆11Oct 23, 2015Updated 10 years ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- gvcf aggregation tool☆12Feb 7, 2018Updated 8 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Nov 30, 2020Updated 5 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- Implementation of Positional Burrows-Wheeler Transform for genetic data☆113Nov 20, 2025Updated 4 months ago
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆75Jun 28, 2017Updated 8 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Sep 16, 2025Updated 6 months ago
- Cloud-native genomic dataframes and batch computing☆1,050Updated this week
- Population-scale detection of novel sequence insertions☆27Aug 16, 2022Updated 3 years ago
- Aligner for sequencing data☆18Feb 13, 2018Updated 8 years ago
- Interval data structure☆236Updated this week
- ☆12Sep 11, 2025Updated 6 months ago
- lumpy: a general probabilistic framework for structural variant discovery☆338Feb 22, 2026Updated 3 weeks ago
- A program to detect denovo-variants using next-generation sequencing data.☆55Mar 30, 2020Updated 5 years ago
- Open Targets Genetics UI☆15Jan 31, 2025Updated last year
- Scalable gVCF merging and joint variant calling for population sequencing projects☆179Apr 12, 2024Updated last year
- GenomicsDB☆109Jan 3, 2023Updated 3 years ago
- a lightweight db framework for exploring genetic variation.☆326Apr 28, 2020Updated 5 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆32Feb 20, 2018Updated 8 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Jul 12, 2020Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- ☆11Apr 3, 2023Updated 2 years ago
- Text Only Genome Viewer!☆234Updated this week