pachterlab / kallisto_paper_analysisLinks
Analysis from kallisto paper
☆32Updated 9 years ago
Alternatives and similar repositories for kallisto_paper_analysis
Users that are interested in kallisto_paper_analysis are comparing it to the libraries listed below
Sorting:
- ☆78Updated 11 years ago
- Tools for bam file processing☆55Updated 10 years ago
- A program for summarising CpG methylation patterns☆20Updated 8 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Fast fusion detection using kallisto☆80Updated last month
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- An awk-like VCF parser☆56Updated last year
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Maximum likelihood demultiplexing☆47Updated 5 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Q ChIP-seq peak caller☆18Updated last year
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago