A Semi-Automated Machine Learning Pipeline. Developed by the Shiu Lab. Implemented using SciKit-Learn
☆28May 7, 2024Updated last year
Alternatives and similar repositories for ML-Pipeline
Users that are interested in ML-Pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆21Oct 12, 2025Updated 6 months ago
- Shiu Lab code base for Machine Learning implemented in SciKit-Learn☆13Oct 5, 2021Updated 4 years ago
- ☆12Nov 23, 2020Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆108Nov 17, 2025Updated 5 months ago
- Rapid, interactive, probabilistic analysis of convergent molecular evolution☆16Feb 11, 2026Updated 2 months ago
- Transposable Elements Representation Learner (TERL)☆19Jun 2, 2025Updated 11 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆120Jul 22, 2025Updated 9 months ago
- ☆11Dec 12, 2014Updated 11 years ago
- A toolkit for identifying recombination and recombinant genotypes☆26Dec 3, 2025Updated 5 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆33Sep 11, 2025Updated 7 months ago
- Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…☆37Jul 11, 2025Updated 9 months ago
- This is the script used for analysis the population data of alfalfa☆11May 22, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- Demographic analysis of Brassica oleracea☆10Updated this week
- Repository for code used for publications☆30Apr 23, 2026Updated last week
- ☆21Aug 8, 2024Updated last year
- tool for dating gene age by micro- and macro-synteny with high speed and accuracy☆15Jan 3, 2026Updated 4 months ago
- Genomic Selection using Neural Networks implemented in TensorFlow☆10Aug 22, 2018Updated 7 years ago
- ALignment Transformation EnviRonment☆11May 8, 2018Updated 7 years ago
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combin…☆12Jul 19, 2016Updated 9 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 2 months ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 3 years ago
- A Maize Color Palette Generator☆18Oct 1, 2020Updated 5 years ago
- HiCAT new project☆35May 18, 2025Updated 11 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆191Oct 15, 2025Updated 6 months ago
- ☆29Nov 22, 2020Updated 5 years ago
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Apr 29, 2021Updated 5 years ago
- Ancestral flowering plant genomes reconstruction☆14Jan 23, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A tool to construct repeats directly from raw reads☆17May 29, 2021Updated 4 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆11Jun 19, 2025Updated 10 months ago
- ☆23Oct 30, 2022Updated 3 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Mar 9, 2026Updated last month
- An R package for comparative transcriptomic analyses of hybrids and their progenitors☆16Sep 5, 2024Updated last year
- ☆37Feb 5, 2022Updated 4 years ago