MartinPippel / DAmarLinks
Long read QC, assembly and scaffolding pipeline
☆13Updated 5 years ago
Alternatives and similar repositories for DAmar
Users that are interested in DAmar are comparing it to the libraries listed below
Sorting:
- A tool for recovering synteny blocks from multiple alignment☆31Updated 4 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Updated 3 years ago
- ☆15Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- ☆11Updated 10 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated this week
- The MafFilter genome alignment processor☆19Updated 5 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆34Updated 2 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆16Updated 7 years ago
- Genome alignment and synteny plots☆32Updated 2 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 5 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 4 years ago
- Consensus genome annotation using OMA☆27Updated 4 months ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- Segmental duplication detection tool☆16Updated 2 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- TD2☆22Updated 4 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated last month
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last month
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- Chromosome-level synteny plotting using orthologous regions☆30Updated last year
- R package to draw syntenic plots in 3 different styles☆42Updated 2 months ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 2 years ago