MartinPippel / DAmar
Long read QC, assembly and scaffolding pipeline
☆12Updated 4 years ago
Alternatives and similar repositories for DAmar:
Users that are interested in DAmar are comparing it to the libraries listed below
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 7 years ago
- A tool for recovering synteny blocks from multiple alignment☆29Updated 3 years ago
- ☆10Updated 10 years ago
- A repo contains historical and updated MTEC libraries.☆17Updated 5 years ago
- scripts to parse and analyse MCScanX collinearity output☆30Updated 4 years ago
- genomic alignment similarity search tool☆19Updated 8 months ago
- R package to draw syntenic plots in 3 different styles☆39Updated last year
- assembly evaluation tool☆34Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Improved Phased Assembler☆28Updated 2 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆36Updated 3 months ago
- FastK based version of Merqury☆22Updated last week
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 4 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- A box of genomics tools☆21Updated 4 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 5 months ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- read and analyse RepeatMasker output☆24Updated last year
- Toolkit for evolutionary analyses of linkage groups☆26Updated 7 months ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated 10 months ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- ☆30Updated 5 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- ☆28Updated 2 years ago
- Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.☆13Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated last year
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆20Updated 4 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- ☆32Updated 4 years ago