MartinPippel / DAmar
Long read QC, assembly and scaffolding pipeline
☆12Updated 4 years ago
Alternatives and similar repositories for DAmar:
Users that are interested in DAmar are comparing it to the libraries listed below
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- These are scripts that I use frequently in genome annotation projects. Some of them have evolved awkwardly so the code is difficult to fo…☆15Updated 7 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 9 months ago
- FastK based version of Merqury☆23Updated 2 weeks ago
- Improved Phased Assembler☆28Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Genome alignment and synteny plots☆29Updated last year
- ☆10Updated 10 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆31Updated 5 years ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- read and analyse RepeatMasker output☆24Updated last year
- R package to draw syntenic plots in 3 different styles☆39Updated last year
- Multi-genome synteny block visualization tool☆32Updated 2 months ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- A box of genomics tools☆21Updated 4 years ago
- ☆15Updated 4 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆37Updated last month
- A repo contains historical and updated MTEC libraries.☆17Updated 5 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- The MafFilter genome alignment processor☆17Updated this week
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 4 years ago
- Domain based annotation of transposable elements☆19Updated 2 months ago
- ☆11Updated 2 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- General purpose population genetics software☆12Updated 5 years ago
- genomic alignment similarity search tool☆18Updated 10 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆22Updated 7 months ago