lconde-ucl / DGELinks
Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline
☆12Updated 3 weeks ago
Alternatives and similar repositories for DGE
Users that are interested in DGE are comparing it to the libraries listed below
Sorting:
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆24Updated 3 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- perSVade: personalized Structural Variation detection☆40Updated 2 weeks ago
- fastest GTF/GFF-to-BED converter chilling around☆27Updated last month
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 5 months ago
- Master of Pores 2☆23Updated 9 months ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- ☆14Updated 5 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Updated 3 years ago
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆18Updated 3 years ago
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆18Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- A pipeline creation tool using Snakemake☆11Updated last week
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆24Updated last year
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- ☆28Updated 2 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last month
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Evolutionary Transcriptomics with R☆45Updated last week
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- Hitting associations with k-mers☆44Updated 3 years ago
- Fast sequencing data quality metrics☆28Updated 2 weeks ago