lconde-ucl / DGELinks
Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline
☆12Updated last year
Alternatives and similar repositories for DGE
Users that are interested in DGE are comparing it to the libraries listed below
Sorting:
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆23Updated 2 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 4 months ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆18Updated 3 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- perSVade: personalized Structural Variation detection☆40Updated last month
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆37Updated 2 years ago
- ☆28Updated 2 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- fastest GTF/GFF-to-BED converter chilling around☆25Updated 2 months ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆23Updated 11 months ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆14Updated 5 years ago
- Evolutionary Transcriptomics with R☆45Updated this week
- Transfer coordinates across genomes☆23Updated 2 months ago
- A pipeline creation tool using Snakemake☆11Updated this week
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- Distribution of TEs and their relationship to genes in host genome☆22Updated 2 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- cgat-apps repository☆34Updated 4 months ago
- Genome Annotation Without Nightmares☆46Updated 6 months ago