lconde-ucl / DGELinks
Nextflow pipeline that runs DESeq2 on data processed with the nextflow RNAseq pipeline
☆13Updated 2 months ago
Alternatives and similar repositories for DGE
Users that are interested in DGE are comparing it to the libraries listed below
Sorting:
- fastq quality assessment and filtering tool☆18Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- Automated Detection and Qualification of Differential Methylation☆16Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆26Updated 2 months ago
- ☆28Updated 3 years ago
- perSVade: personalized Structural Variation detection☆40Updated 3 weeks ago
- A pipeline creation tool using Snakemake☆12Updated 2 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 10 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated 2 weeks ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆21Updated 2 weeks ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago
- cgat-apps repository☆34Updated 10 months ago
- ☆15Updated 5 years ago
- Distribution of TEs and their relationship to genes in host genome☆24Updated 2 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Trimming tool for Oxford Nanopore sequence data☆22Updated 4 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Structural variant (SV) analysis tools☆40Updated last year
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- fastest GTF/GFF-to-BED converter chilling around☆30Updated 3 weeks ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆19Updated 3 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆35Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 5 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 7 months ago