Alternatives and similar repositories for crosshap

Users that are interested in crosshap are comparing it to the libraries listed below

• dorolin / rearrvisr
  An R package to detect, classify, and visualize genome rearrangements
  ☆15Updated 5 years ago
• AliTVTeam / AliTV-perl-interface
  ☆11Updated 4 years ago
• GuangchuangYu / ggtree-current-protocols
  Using ggtree to Visualize Data on Tree-Like Structure
  ☆25Updated 5 years ago
• j-a-thia / genomalicious
  A smorgasbord of R functions for performing and teaching population genomic analyses
  ☆19Updated 3 months ago
• thomasp85 / FindMyFriends
  Fast alignment-free pangenome creation and exploration
  ☆28Updated 5 years ago
• tbradley1013 / tree-subset-shiny
  This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees
  ☆15Updated 6 years ago
• YuLab-SMU / tidytree
  A Tidy Tool for Phylogenetic Tree Data Manipulation
  ☆57Updated last year
• fkeck / bioseq
  A Toolbox for Manipulating Biological Sequences in R
  ☆26Updated 2 months ago
• duchene / phylomad
  ☆19Updated last year
• gmbecker / genbankr
  ☆20Updated 2 years ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆18Updated last year
• Eco-Flow / synteny
  A Nextflow pipeline for running synteny analysis.
  ☆16Updated 5 months ago
• emvolz / treedater
  Scalable relaxed clock phylogenetic dating
  ☆27Updated 3 months ago
• Sanrrone / multiGenomicContext
  multiGenomicContext is a pipeline to see your protein in many genomic context as much as gbk you have.
  ☆10Updated 3 years ago
• shaunpwilkinson / kmer
  K-mer Counting for Biological Sequence Analysis
  ☆27Updated 6 years ago
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated last year
• alvinxhan / PhyCLIP
  Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)
  ☆19Updated 5 years ago
• phytest-devs / phytest
  Quality control for phylogenetic analyses
  ☆13Updated last week
• drostlab / metablastr
  Seamless Integration of BLAST Sequence Searches in R
  ☆30Updated 2 years ago
• FePhyFoFum / PyPHLAWD
  Python version of PHLAWD
  ☆21Updated last year
• JCVenterInstitute / PanGenomePipeline
  PanGenomePipeline
  ☆16Updated last year
• YuLab-SMU / ggtreeDendro
  Drawing 'dendrogram' using 'ggtree'
  ☆13Updated last month
• ewissel / hAMRoaster
  hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
  ☆22Updated last year
• genomematt / xenomapper
  A utility for splitting mixed origin NGS reads
  ☆10Updated 4 years ago
• ngs-docs / 2015-nov-adv-rna
  ☆18Updated 10 years ago
• ngs-docs / 2023-snakemake-book-draft
  A DRAFT, early stage book on snakemake.
  ☆22Updated 2 years ago
• GuangchuangYu / plotTree-ggtree
  ggtree version of plotTree.R
  ☆18Updated 7 years ago
• mikemc / metacal
  Metagenomics calibration R package
  ☆20Updated 3 years ago
• weissmanlab / magic
  Minimal Assumption Genomic Inference of Coalescence
  ☆14Updated 2 years ago
• gosling-lang / grosling
  R interface to 'Gos'
  ☆39Updated 2 years ago