☆14Nov 4, 2024Updated last year
Alternatives and similar repositories for crosshap
Users that are interested in crosshap are comparing it to the libraries listed below
Sorting:
- ☆13Oct 15, 2024Updated last year
- ☆19Sep 22, 2022Updated 3 years ago
- ☆15Jul 19, 2025Updated 8 months ago
- Easily Arrange Images with Patchwork Alongside ggplot2 Figures.☆80May 2, 2025Updated 10 months ago
- NLR annotation tool☆35Mar 6, 2024Updated 2 years ago
- CLI to automate Nextflow pipeline testing☆12Dec 15, 2025Updated 3 months ago
- See https://biometris.github.io/LMMsolver for a full description☆18Updated this week
- A web app using Vision Transformers for quick and accurate diagnosis of plant diseases, aiding effective treatment and plant health.☆12Jan 28, 2026Updated last month
- Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.☆20Nov 17, 2025Updated 4 months ago
- ☆10Sep 4, 2024Updated last year
- ☆15Aug 22, 2023Updated 2 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Aug 18, 2020Updated 5 years ago
- vim plugin for DNA sequences and sequencing files (SAM/BAM, PAF, FA/FQ, etc.)☆19Jun 2, 2025Updated 9 months ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆18Feb 26, 2026Updated 3 weeks ago
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆24Dec 15, 2025Updated 3 months ago
- Commands and Classes for interfacing between Imaris and Fiji☆13Sep 30, 2024Updated last year
- ImageJ plugins☆14Nov 29, 2023Updated 2 years ago
- Software for estimating genome-wide genealogies for thousands of samples☆41Oct 17, 2025Updated 5 months ago
- An efficient genetic data imputation pipeline☆12Apr 7, 2022Updated 3 years ago
- PlantCAD: cross-species modeling of plant genomes☆66Mar 7, 2026Updated last week
- Pinpoints the mutation favored by selection☆34Nov 2, 2021Updated 4 years ago
- Interactive eQTL visualizations☆14Dec 12, 2022Updated 3 years ago
- A curated collection of free resources to help the aspiring computational biologist learn about the R programming language.☆32Nov 26, 2024Updated last year
- Source code of the Bgee pipeline used to build the Bgee database☆12Mar 9, 2026Updated last week
- Simple scripts to create images and animations in Rayshader for R stats☆12Feb 18, 2026Updated last month
- Transposable Elements Representation Learner (TERL)☆20Jun 2, 2025Updated 9 months ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- ☆11Feb 10, 2025Updated last year
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 4 months ago
- Detection and classification selective sweep use domain adaptive model☆10Apr 29, 2024Updated last year
- Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy …☆23Feb 29, 2024Updated 2 years ago
- ☆72Sep 24, 2024Updated last year
- R package for fitting high-dimensional multivariate linear mixed effect models☆38Oct 20, 2025Updated 5 months ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- An integrated high performance bioinformatics toolkit☆23Apr 24, 2019Updated 6 years ago
- ☆29Mar 27, 2024Updated last year
- ☆10Feb 21, 2020Updated 6 years ago
- 📦 Augmented Reality in R☆13Oct 15, 2020Updated 5 years ago
- Here we present a method to plot the outputs of RFMIX version 2☆31Aug 14, 2024Updated last year