Alternatives and similar repositories for fastBio

Users that are interested in fastBio are comparing it to the libraries listed below

• phiweger / nanotext
  Proteins as words, genomes as documents.
  ☆19Updated 5 years ago
• ahoarfrost / LookingGlass
  pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning
  ☆15Updated 3 years ago
• mourisl / MSAplot
  Plot multiple sequence alignment (MSA)
  ☆16Updated last year
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 4 years ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆27Updated 2 years ago
• Edinburgh-Genome-Foundry / Geneblocks
  Find common blocks and differences between DNA sequences
  ☆42Updated 2 months ago
• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆35Updated 2 years ago
• jbloomlab / alignparse
  Align sequences and then parse features.
  ☆17Updated 2 months ago
• pnnl / mercat
  MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
  ☆18Updated 3 years ago
• cebel / pyuniprot
  Python package to query and analyse UniProt
  ☆25Updated 5 years ago
• pirl-unc / mhcgnomes
  Parsing MHC nomenclature in the wild
  ☆18Updated this week
• lvrcek / GNNome-assembly
  Learning to untangle genome assembly with graph neural networks.
  ☆72Updated last year
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆27Updated last month
• wilkelab / ProteinEvolutionToolbox
  ☆15Updated 9 years ago
• fomightez / sequencework
  programs and scripts, mainly python, for analyses related to nucleic or protein sequences
  ☆24Updated 2 months ago
• boxiangliu / covseq
  CoV-Seq: COVID-19 Genomic Sequence Database and Visualization
  ☆15Updated 5 years ago
• evoldoers / machineboss
  Bioinformatics Open Source Sequence machine
  ☆32Updated 2 years ago
• JJAlmagro / TargetP-2.0
  Detecting Sequence Signals in Targeting Peptides Using Deep Learning
  ☆13Updated 6 years ago
• rmenegaux / fastDNA
  ☆25Updated 4 years ago
• NeuroCSUT / ViraMiner
  CNN based classifier for detecting viral sequences among metagenomic contigs
  ☆34Updated 5 years ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆42Updated 6 years ago
• schatzlab / biomedicalresearch2021
  Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research
  ☆13Updated 4 years ago
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆25Updated 2 weeks ago
• c5shen / EMMA
  an ensemble usage of MAFFT-linsi --add on large datasets
  ☆13Updated last year
• apcamargo / RNAsamba
  A tool for computing the coding potential of RNA transcript sequences using deep learning classification model
  ☆57Updated 3 years ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆35Updated last year
• MoseleyBioinformaticsLab / kegg_pull
  Package that facilitates pulling database entries from KEGG via its REST API
  ☆11Updated 2 years ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆58Updated 4 years ago
• BioinformaticsToolsmith / MeShClust2
  MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
  ☆15Updated 4 years ago
• althonos / lightmotif
  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
  ☆61Updated last month