Deep learning library for biological sequences. Extension of Fastai and Pytorch.
☆38Jul 17, 2026Updated 3 months ago
Alternatives and similar repositories for fastBio
Users that are interested in fastBio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning☆17Feb 19, 2026Updated 8 months ago
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 8 years ago
- ☆15May 22, 2025Updated last year
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Skiver: Reference-free quality control of (meta)genomic sequencing datasets using (k, v)-mer sketches☆13Aug 19, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Apr 1, 2023Updated 3 years ago
- Transposable Elements Representation Learner (TERL)☆20Jun 2, 2025Updated last year
- Training scripts for BERTax☆12Jun 12, 2024Updated 2 years ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Sep 27, 2018Updated 8 years ago
- POC Nextflow pipeline to run Illumina DRAGEN software☆14Aug 15, 2025Updated last year
- in silico plasmid extraction☆13Sep 18, 2017Updated 9 years ago
- Demonstrating the PRoot program☆11Jul 29, 2016Updated 10 years ago
- ☆15Dec 21, 2021Updated 4 years ago
- Find Unique genomic Regions☆34Sep 29, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆18Jul 9, 2018Updated 8 years ago
- Just another minhash implementation.☆13Updated this week
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Nextflow Pipelines☆10Aug 15, 2026Updated 2 months ago
- ☆59Dec 12, 2023Updated 2 years ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 4 years ago
- Multiple sequence alignment browser☆12Dec 12, 2022Updated 3 years ago
- Naive PCA for genotype data☆10Jul 27, 2016Updated 10 years ago
- A database for signatures of public genomic sources☆18Jul 18, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- Bacterial Annotation by Learned Representation of Genes☆62Mar 26, 2026Updated 7 months ago
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆120Jan 29, 2026Updated 9 months ago
- ☆12Aug 17, 2024Updated 2 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 6 years ago
- High-performance error correction for Illumina resequencing data☆75May 31, 2016Updated 10 years ago
- Proteins as words, genomes as documents.☆19Nov 11, 2020Updated 5 years ago
- Source for course materials at http://ged.msu.edu/angus/☆11Jun 4, 2014Updated 12 years ago
- A high-precision protein classification model☆12Jul 17, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R Interface to the NCBI SRA metadata☆23Nov 19, 2018Updated 7 years ago
- HMmer Based UndeRstandinG of gene clustERs☆15Feb 6, 2026Updated 8 months ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆13Oct 21, 2026Updated last week
- Day 2 of ACAD's 2018 Advanced Bioinformatics Workshop☆12Nov 27, 2018Updated 7 years ago
- sfasta☆35Feb 25, 2026Updated 8 months ago
- ☆47Jun 27, 2023Updated 3 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 7 years ago