Alternatives and similar repositories for fastBio

Users that are interested in fastBio are comparing it to the libraries listed below

• phiweger / nanotext
  Proteins as words, genomes as documents.
  ☆20Updated 4 years ago
• ahoarfrost / LookingGlass
  pretrained LookingGlass language model for biological read-length DNA sequences, and related models derived from transfer learning
  ☆16Updated 2 years ago
• mourisl / MSAplot
  Plot multiple sequence alignment (MSA)
  ☆15Updated 9 months ago
• jambler24 / GenGraph
  A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
  ☆51Updated 3 years ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆26Updated 2 months ago
• pnnl / mercat
  MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
  ☆18Updated 2 years ago
• schatzlab / biomedicalresearch2021
  Course Materials for EN.601.452 / AS.020.415 Computational Biomedical Research & Advanced Biomedical Research
  ☆13Updated 3 years ago
• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆32Updated 2 years ago
• jbloomlab / alignparse
  Align sequences and then parse features.
  ☆18Updated 3 months ago
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆43Updated 5 years ago
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆45Updated 6 years ago
• jolespin / soothsayer
  High-level analysis package for (bio-)informatics
  ☆10Updated last year
• evoldoers / machineboss
  Bioinformatics Open Source Sequence machine
  ☆33Updated last year
• NeuroCSUT / ViraMiner
  CNN based classifier for detecting viral sequences among metagenomic contigs
  ☆33Updated 4 years ago
• harmslab / epistasis
  A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
  ☆34Updated last year
• jbloomlab / SARS2-RBD-escape-calc
  SARS-CoV-2 RBD antibody escape calculator
  ☆12Updated 7 months ago
• JJAlmagro / TargetP-2.0
  Detecting Sequence Signals in Targeting Peptides Using Deep Learning
  ☆13Updated 5 years ago
• cebel / pyuniprot
  Python package to query and analyse UniProt
  ☆25Updated 4 years ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated 2 years ago
• Edinburgh-Genome-Foundry / Geneblocks
  Find common blocks and differences between DNA sequences
  ☆42Updated 3 months ago
• raphael-upmc / proteinClusteringPipeline
  a pipeline to cluster proteins into families
  ☆10Updated 5 years ago
• Edinburgh-Genome-Foundry / Caravagene
  🎨 Python library to plot multi-part genetic constructs
  ☆25Updated 3 months ago
• wilkelab / ProteinEvolutionToolbox
  ☆14Updated 9 years ago
• millanp95 / DeLUCS
  This repository contains all the source files required to run DeLUCS, a deep learning clustering algorithm for DNA sequences.
  ☆25Updated 2 years ago
• MoseleyBioinformaticsLab / kegg_pull
  Package that facilitates pulling database entries from KEGG via its REST API
  ☆9Updated last year
• althonos / pymuscle5
  Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
  ☆21Updated last year
• pirl-unc / mhcgnomes
  Parsing MHC nomenclature in the wild
  ☆17Updated 3 months ago
• BIMSBbioinfo / pigx_sars-cov-2
  PiGx SARS-CoV-2 wastewater sequencing pipeline
  ☆18Updated 2 years ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆33Updated last year
• mikaells / RibDif
  Count and compare 16S rRNA genes within a genus
  ☆16Updated 11 months ago