sanger-pathogens / companionLinks
This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
☆21Updated 4 years ago
Alternatives and similar repositories for companion
Users that are interested in companion are comparing it to the libraries listed below
Sorting:
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆29Updated last year
- The Zika bioinformatics pipeline☆36Updated 5 years ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago
- Workflows I find helpful for fungal genome annotation☆21Updated 2 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Updated 6 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Maximum likelihood demultiplexing☆50Updated 11 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 2 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- ☆38Updated 2 months ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- full taxonomer cython repository☆22Updated 6 years ago
- Fully automated generation of UCSC assembly hubs☆35Updated last year
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 7 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Protein Alignment and Detection Interface☆60Updated last year
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆23Updated last year
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- A versatile toolkit for k-mers with taxonomic information☆82Updated 4 months ago
- Validate FastQ Files☆36Updated 7 years ago
- A python parser to simplify and build the VCF (Variant Call Format).☆49Updated last year
- A collection of modules and sub-workflows for Nextflow☆28Updated 2 months ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago