Alternatives and similar repositories for companion:

Users that are interested in companion are comparing it to the libraries listed below

• shenwei356 / easy_qsub
  Easily submitting multiple PBS jobs or running local jobs in parallel. Multiple input files supported.
  ☆28Updated last year
• mjsull / HapFlow
  Visualise interstrain recombination from environmental samples.
  ☆26Updated 5 years ago
• lh3 / pre-pe
  Preprocessing paired-end reads produced with experiment-specific protocols
  ☆32Updated 6 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆33Updated last year
• KnowEnG / TeachEnG
  A Teaching Engine for Genomics
  ☆11Updated 3 years ago
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆42Updated 2 years ago
• sequencing / NxTrim
  Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
  ☆54Updated 6 years ago
• galaxyproject / cargo-port
  cache packages permanently
  ☆13Updated 7 months ago
• ncbi / magicblast
  ☆35Updated last year
• medvir / VirMet
  Set of tools for viral metagenomics.
  ☆14Updated this week
• nf-core / tower-action
  GitHub Action to launch a workflow using Nextflow Tower.
  ☆12Updated last year
• luslab / luslab-nf-modules
  Luslab nextflow modules
  ☆14Updated 3 years ago
• will-rowe / hulk
  Histosketching Using Little Kmers
  ☆55Updated last year
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆32Updated 3 years ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 6 years ago
• nilesh-tawari / ChronQC
  Manuscript describing ChronQC is now available online in Bioinformatics
  ☆18Updated 5 years ago
• benedictpaten / sonLib
  Small general purpose library for C and Python with focus on bioinformatics.
  ☆29Updated 2 years ago
• percyfal / snakemake-rules
  Library of snakemake rules.
  ☆12Updated 6 years ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆34Updated last year
• MultiQC / test-data
  Test data for MultiQC.
  ☆22Updated last week
• peterjc / picobio
  Miscellaneous Bioinformatics scripts etc mostly in Python
  ☆45Updated 2 weeks ago
• COMBINE-lab / wasabi
  Prepare Sailfish and Salmon output for downstream analysis
  ☆43Updated 5 years ago
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆24Updated 9 months ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated last month
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆84Updated 6 years ago
• Nazeeefa / awesome-sequencing-tech-papers
  A collection of publications on comparison of high-throughput sequencing technologies.
  ☆26Updated last month
• indraniel / fqgrep
  An approximate sequence pattern matcher for FASTQ/FASTA files.
  ☆30Updated 9 years ago
• tlawrence3 / FAST
  FAST: Fast Analysis of Sequences Toolbox
  ☆31Updated 5 years ago
• HpcGridRunner / HpcGridRunner
  source code for HpcGridRunner
  ☆17Updated 3 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 6 years ago