sanger-pathogens / companion
This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
☆21Updated 4 years ago
Alternatives and similar repositories for companion:
Users that are interested in companion are comparing it to the libraries listed below
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 6 years ago
- Workflows I find helpful for fungal genome annotation☆21Updated last year
- A Teaching Engine for Genomics☆12Updated 4 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- CRyPTIC data processing pipelines☆33Updated 9 months ago
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆30Updated 9 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated 9 months ago
- reference free variant assembly☆33Updated last year
- Small general purpose library for C and Python with focus on bioinformatics.☆30Updated 2 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 7 months ago
- Library of snakemake rules.☆12Updated 6 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- ☆51Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆37Updated last year
- A collection of publications on comparison of high-throughput sequencing technologies.☆27Updated 3 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated 11 months ago
- adds sample names and read-group (RG) tags to BAM alignments☆52Updated 4 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 2 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated last year
- small RNA analysis from NGS data☆37Updated 7 months ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated last week
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago