wtsi-svi / ReadServer
Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)
☆14Updated 7 years ago
Alternatives and similar repositories for ReadServer:
Users that are interested in ReadServer are comparing it to the libraries listed below
- Integrated Variant Caller☆17Updated 7 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated 5 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- ☆12Updated 3 years ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Hemang Parikh☆11Updated 9 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 4 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Updated 9 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 9 months ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 8 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Rapid competitive read demulitplexer. Made with tries.☆24Updated last year
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- ☆28Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆36Updated last year
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago