wtsi-svi / ReadServer
Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)
☆14Updated 7 years ago
Alternatives and similar repositories for ReadServer:
Users that are interested in ReadServer are comparing it to the libraries listed below
- Integrated Variant Caller☆17Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated 4 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 8 years ago
- ☆12Updated 3 years ago
- Recommended Graphtyper pipelines☆14Updated 4 years ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- Hemang Parikh☆11Updated 9 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 8 months ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Updated 9 years ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Python bindings to minimap2☆16Updated 7 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.