Oshlack / LaceLinks
Building SuperTranscripts: A linear representation of transcriptome data
☆68Updated 4 years ago
Alternatives and similar repositories for Lace
Users that are interested in Lace are comparing it to the libraries listed below
Sorting:
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 4 years ago
- Same species annotation lift over pipeline.☆97Updated 2 years ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆94Updated last month
- Quickly calculate and visualize sequence coverage in alignment files☆100Updated 6 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 7 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated 5 months ago
- BigWig and BAM utilities☆102Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆95Updated 9 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 5 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 5 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆68Updated 9 months ago
- A read extraction and realignment tool for next generation sequencing data☆104Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆52Updated 5 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- PHAST☆80Updated last week
- High-performance error correction for Illumina resequencing data☆74Updated 9 years ago
- ☆64Updated 5 years ago
- BAM Statistics, Feature Counting and Annotation☆151Updated 2 weeks ago
- Evolutionary Transcriptomics with R☆47Updated this week
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- Maximum likelihood demultiplexing☆50Updated 11 months ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Tools to annotate genomes using long read transcriptomics data☆45Updated 5 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆109Updated 3 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago