MAGIC - imputation and de-noising single-cell RNA seq data sets
☆27Sep 19, 2019Updated 6 years ago
Alternatives and similar repositories for magic
Users that are interested in magic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆379Oct 3, 2024Updated last year
- Analysis of Single Cell Expression, Normalization and Differential expression☆13Feb 29, 2020Updated 6 years ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆20Feb 9, 2022Updated 4 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Mar 26, 2022Updated 4 years ago
- Highly scalable integration and classification of single-cell RNA sequencing data☆11Dec 27, 2020Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- fast hierarchical clustering for large-scale single-cell data☆10Jul 11, 2021Updated 4 years ago
- Version 2.1.0 released☆23Sep 16, 2019Updated 6 years ago
- Single-cell RNA-seq Gene Expression Recovery☆114Nov 28, 2024Updated last year
- GrandPrix☆16May 27, 2019Updated 6 years ago
- ☆15Jun 3, 2019Updated 6 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Jul 23, 2020Updated 5 years ago
- Imputing dropout events in single-cell RNA-sequencing data☆18Dec 7, 2020Updated 5 years ago
- ☆19Oct 27, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Scanpy use cases.☆90Sep 4, 2020Updated 5 years ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- Tools used in Human Cell Landscape(HCL)☆56Jul 30, 2020Updated 5 years ago
- Total copy number inference from single-cell RNA and ATAC sequing with cell clustering☆11Oct 31, 2024Updated last year
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- ☆361Dec 9, 2021Updated 4 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- ☆21Dec 23, 2024Updated last year
- ☆22May 1, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Gene network analysis☆19Dec 2, 2022Updated 3 years ago
- scRNA-seq cell type identification☆44Oct 3, 2019Updated 6 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Sep 18, 2025Updated 6 months ago
- ☆15Nov 9, 2018Updated 7 years ago
- ☆21Jul 3, 2019Updated 6 years ago
- ☆19Jan 10, 2025Updated last year
- An algorithm used to classify the cell types from single cell rna sequence data.☆10Jan 24, 2021Updated 5 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files☆13Jan 31, 2016Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Cellsnake tool main repo☆36Feb 22, 2024Updated 2 years ago
- python module for querying the vicc knowledgebase integration datastore☆11Jul 6, 2023Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆39Jul 3, 2019Updated 6 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆35Jun 19, 2025Updated 9 months ago
- Code and data sharing of Liu et al. 2023 manuscript☆17Apr 18, 2023Updated 2 years ago
- Codes used in LISTA project.☆15Apr 17, 2024Updated last year