akiomiyao / tefLinks
Transposable Element Finder - Detection of active transposable elements from NGS data
☆9Updated 2 weeks ago
Alternatives and similar repositories for tef
Users that are interested in tef are comparing it to the libraries listed below
Sorting:
- ☆22Updated 5 months ago
- ☆23Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated last week
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 8 months ago
- ☆19Updated 2 years ago
- A program for the analysis of single cell nanopore long read data☆19Updated 2 months ago
- Immuological gene typing and annotation for genome assembly☆37Updated 2 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Genomic Association Tester☆31Updated 2 years ago
- ☆36Updated 2 years ago
- QDNAseq bin annotation for hg38☆15Updated 2 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 3 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 7 months ago
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- BISulfite-seq CUI Toolkit☆19Updated 3 weeks ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 11 months ago
- ☆37Updated 5 years ago
- Long read to rMATS☆31Updated 2 years ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆21Updated 2 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆35Updated 2 weeks ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- Version II of Mandalorion☆32Updated 6 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 months ago
- ☆18Updated last month
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago