akiomiyao / tef
Transposable Element Finder - Detection of active transposable elements from NGS data
☆9Updated 2 months ago
Alternatives and similar repositories for tef:
Users that are interested in tef are comparing it to the libraries listed below
- A program for the analysis of single cell nanopore long read data☆16Updated last week
- ☆33Updated last year
- ☆36Updated 5 years ago
- ☆21Updated 3 months ago
- Enabling differential allele-specific analysis☆11Updated 3 months ago
- ☆18Updated 7 months ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- ☆23Updated 3 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 6 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- ☆17Updated 2 years ago
- ☆16Updated 4 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 11 months ago
- Genomic Association Tester☆30Updated last year
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- ☆21Updated last year
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated last year
- ☆15Updated 4 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆22Updated 3 months ago
- TEspeX - pipeline for Transposable Elements expression quantification☆20Updated last year
- ☆28Updated 3 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 6 months ago
- ☆23Updated 2 years ago
- 4C-seq processing pipeline☆23Updated last week
- Find and characterise transposable element insertions☆21Updated last year
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Updated 2 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆31Updated last month
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated last month
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago