ListerLab / TEPIDLinks
Transposable element polymorphism identification
☆33Updated 4 years ago
Alternatives and similar repositories for TEPID
Users that are interested in TEPID are comparing it to the libraries listed below
Sorting:
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Transposable Elements MOvement detection using LOng reads☆21Updated last month
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 4 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆30Updated 5 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- ☆30Updated 9 months ago
- SV genotyping with long reads☆39Updated last year
- A pipeline for isoseq☆23Updated 6 years ago
- An easy way to run BioNano genomic analysis☆27Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- Custom tools to 'facilitate' BioNano Genomics data analysis