ListerLab / TEPIDLinks
Transposable element polymorphism identification
☆34Updated 5 years ago
Alternatives and similar repositories for TEPID
Users that are interested in TEPID are comparing it to the libraries listed below
Sorting:
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Transposable Elements MOvement detection using LOng reads☆22Updated last month
- A pipeline for isoseq☆23Updated 7 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Genome Annotation Without Nightmares☆46Updated 7 months ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆35Updated 7 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- A (very) simple script to QC Hi-C data.☆26Updated 9 months ago
- Structural variant caller☆55Updated 3 years ago
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 8 months ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 6 years ago
- ☆30Updated 4 years ago
- ☆81Updated 6 months ago
- ☆51Updated 6 years ago
- Tutorial on using popular tools for learning about population history☆51Updated 7 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated 2 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- ☆26Updated 7 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 8 years ago
- SV genotyping with long reads☆39Updated 2 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- ☆42Updated last year
- ☆42Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 3 months ago
- ☆36Updated last year
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago