seqcode / alloLinks
Allo: a multi-mapped read rescue strategy for gene regulatory analyses
☆24Updated last year
Alternatives and similar repositories for allo
Users that are interested in allo are comparing it to the libraries listed below
Sorting:
- ☆35Updated last year
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated 2 months ago
- ☆23Updated 9 months ago
- ☆38Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆43Updated 3 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆67Updated 3 weeks ago
- Long-read splice alignment with high accuracy☆63Updated last year
- Simple library/pipeline to generate and handle Hi-C data.☆39Updated 10 months ago
- ☆20Updated 3 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 6 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- ☆13Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Improving gene isoform quantification with miniQuant☆29Updated last week
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆57Updated last month
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated last week
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 6 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆31Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆39Updated this week
- new repo☆28Updated 4 years ago
- ☆34Updated 2 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 7 months ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- ☆37Updated 6 years ago
- Long read to rMATS☆32Updated 2 years ago
- Scoring GT/AG sites for improving spliced alignment☆46Updated 2 weeks ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆23Updated 2 years ago