Allo: a multi-mapped read rescue strategy for gene regulatory analyses
☆25Sep 5, 2024Updated 2 years ago
Alternatives and similar repositories for allo
Users that are interested in allo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- Methylation analysis pipeline for genome graph☆16May 25, 2025Updated last year
- Simulation tool for ChIP- and other -seq experiments☆14Mar 13, 2023Updated 3 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq at locus- or subfamily-level☆25Aug 25, 2026Updated 3 weeks ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆33Dec 11, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆35Jul 8, 2025Updated last year
- ANI based satellite annotation☆29Aug 6, 2026Updated last month
- Tool comparison for detecting differentially expressed individual transposable elements☆12Jan 7, 2022Updated 4 years ago
- team lander github repo☆10Aug 7, 2021Updated 5 years ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆46Sep 13, 2024Updated 2 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆124Jun 20, 2024Updated 2 years ago
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 4 months ago
- ☆15May 3, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- SRF: Satellite Repeat Finder☆108Jan 8, 2024Updated 2 years ago
- ☆10Jan 27, 2025Updated last year
- PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous ge…☆17Jun 2, 2026Updated 3 months ago
- Allele-specific alignment sorting☆63Aug 17, 2026Updated last month
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 5 years ago
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 3 years ago
- Polyploid-aware, multiscale super-pangenome graph strategy☆20Oct 29, 2025Updated 10 months ago
- ☆15Apr 16, 2026Updated 5 months ago
- ☆13Dec 19, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MethPhaser: methylation-based haplotype phasing of human genomes☆56Mar 5, 2025Updated last year
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Feb 13, 2018Updated 8 years ago
- A minimal Python re-implementation of the A* with seed heuristic for exact global alignment (edit distance) in near-linear time☆22Nov 30, 2024Updated last year
- Clustering motif models to remove redundancy☆47Apr 12, 2023Updated 3 years ago
- pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2☆24Sep 9, 2026Updated last week
- Quantification of transposable element expression using RNA-seq☆98Feb 8, 2024Updated 2 years ago
- HiCAT new project☆39May 18, 2025Updated last year
- ☆14Sep 2, 2026Updated 2 weeks ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆27Mar 3, 2026Updated 6 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆15Aug 26, 2026Updated 3 weeks ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆15Apr 28, 2026Updated 4 months ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Jun 6, 2019Updated 7 years ago
- ☆31Mar 27, 2024Updated 2 years ago
- A python command line tool to generate modbed files for visualization on WashU Epigenome Browser☆11Aug 7, 2026Updated last month
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Apr 3, 2020Updated 6 years ago
- Blazing fast toolkit to work with .hic and .cool files☆48Updated this week