Allo: a multi-mapped read rescue strategy for gene regulatory analyses
☆24Sep 5, 2024Updated last year
Alternatives and similar repositories for allo
Users that are interested in allo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆11May 12, 2025Updated 11 months ago
- Methylation analysis pipeline for genome graph☆15May 25, 2025Updated 11 months ago
- Simulation tool for ChIP- and other -seq experiments☆14Mar 13, 2023Updated 3 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆22Apr 16, 2026Updated last week
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Dec 11, 2025Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆32Jul 8, 2025Updated 9 months ago
- ANI based satellite annotation☆26Mar 2, 2026Updated last month
- Tool comparison for detecting differentially expressed individual transposable elements☆11Jan 7, 2022Updated 4 years ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- Genotyping of copy number sensitive allele-specific haplotypes☆28Nov 6, 2025Updated 5 months ago
- Centromere mapping and annotation pipeline☆23Apr 7, 2026Updated 3 weeks ago
- ☆10Jan 27, 2025Updated last year
- GenMap - Fast and Exact Computation of Genome Mappability☆115Jun 20, 2024Updated last year
- SRF: Satellite Repeat Finder☆102Jan 8, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆43Apr 20, 2026Updated last week
- Allele-specific alignment sorting☆62Jan 7, 2023Updated 3 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆46Sep 13, 2024Updated last year
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 5 years ago
- ☆16Apr 16, 2026Updated last week
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆15Oct 23, 2024Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆32Feb 13, 2026Updated 2 months ago
- A minimal Python re-implementation of the A* with seed heuristic for exact global alignment (edit distance) in near-linear time☆22Nov 30, 2024Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Feb 13, 2018Updated 8 years ago
- ☆14Oct 9, 2025Updated 6 months ago
- Clustering motif models to remove redundancy☆44Apr 12, 2023Updated 3 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Mar 11, 2026Updated last month
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆27Mar 3, 2026Updated last month
- ☆13Dec 19, 2022Updated 3 years ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Apr 14, 2026Updated 2 weeks ago
- Quantification of transposable element expression using RNA-seq☆89Feb 8, 2024Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Mar 25, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Blazing fast toolkit to work with .hic and .cool files☆44Apr 20, 2026Updated last week
- ☆73Sep 24, 2024Updated last year
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Jun 6, 2019Updated 6 years ago
- ☆30Mar 27, 2024Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆32Jun 12, 2025Updated 10 months ago
- A python command line tool to generate modbed files for visualization on WashU Epigenome Browser☆11Dec 10, 2025Updated 4 months ago
- High-precision TE Annotator☆155Dec 4, 2025Updated 4 months ago