seqcode / alloLinks
Allo: a multi-mapped read rescue strategy for gene regulatory analyses
☆24Updated 11 months ago
Alternatives and similar repositories for allo
Users that are interested in allo are comparing it to the libraries listed below
Sorting:
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆63Updated 3 weeks ago
- ☆36Updated 2 years ago
- ☆23Updated 8 months ago
- ☆34Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last month
- Long-read splice alignment with high accuracy☆64Updated 11 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 10 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated 3 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- ☆19Updated 2 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆38Updated 9 months ago
- Blazing fast toolkit to work with .hic and .cool files☆38Updated this week
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- ☆23Updated 4 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆29Updated 11 months ago
- SingleCell Nanopore sequencing data analysis☆60Updated 2 months ago
- Improving gene isoform quantification with miniQuant☆26Updated 3 weeks ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Updated 2 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- A tutorial on structural variant calling for short read sequencing data☆39Updated 10 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆41Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- ☆33Updated 2 years ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year