seqcode / alloLinks
Allo: a multi-mapped read rescue strategy for gene regulatory analyses
☆24Updated 9 months ago
Alternatives and similar repositories for allo
Users that are interested in allo are comparing it to the libraries listed below
Sorting:
- ☆19Updated 2 years ago
- ☆22Updated 5 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated last month
- ☆23Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last year
- ☆19Updated 10 months ago
- ☆36Updated 2 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆29Updated 3 weeks ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- TEspeX - pipeline for Transposable Elements expression quantification☆21Updated last year
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 8 months ago
- Long read to rMATS☆31Updated 2 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated last year
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆23Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 2 months ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆24Updated 3 years ago
- A gene fusion caller for long-read transcriptome sequencing data.☆18Updated last year
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Snakemake pipeline to analyze transposable element 'omics data.☆20Updated this week
- ☆32Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆33Updated 6 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆23Updated 6 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆59Updated 3 weeks ago
- ☆26Updated 2 months ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- toolkit to process gtf files☆17Updated 3 years ago
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago