Dfam Transposable Element Tools Docker container.
☆104Mar 30, 2026Updated 3 weeks ago
Alternatives and similar repositories for TETools
Users that are interested in TETools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- De-Novo Repeat Discovery Tool☆236Jul 21, 2025Updated 8 months ago
- Extensive de-novo TE Annotator☆444Apr 5, 2026Updated 2 weeks ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Mar 9, 2026Updated last month
- Annotation helper tool for the manual curation of transposable element consensus sequences☆55Mar 5, 2025Updated last year
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆456Apr 12, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- k-mer based assembly evaluation☆340Jun 28, 2024Updated last year
- Methylation analysis pipeline for genome graph☆15May 25, 2025Updated 10 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆301Apr 2, 2026Updated 2 weeks ago
- Neural network classification of TE☆99Apr 3, 2026Updated 2 weeks ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆187Updated this week
- A genome completeness evaluation tool based on miniprot☆238Sep 18, 2025Updated 7 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆234Sep 6, 2024Updated last year
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- ☆29Jul 16, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Tools for fast and flexible genome assembly scaffolding and improvement☆563Feb 14, 2024Updated 2 years ago
- High-precision TE Annotator☆154Dec 4, 2025Updated 4 months ago
- Same species annotation lift over pipeline.☆98Jul 21, 2023Updated 2 years ago
- This is the standalone version of the EviAnn pipeline☆144Apr 2, 2026Updated 2 weeks ago
- Long read / genome alignment software☆314Dec 16, 2025Updated 4 months ago
- FamDB file format library and utilities☆38Aug 27, 2025Updated 7 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆205Nov 23, 2025Updated 4 months ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆31Jan 30, 2026Updated 2 months ago
- ☆18Jan 14, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Quantification of transposable element expression using RNA-seq☆89Feb 8, 2024Updated 2 years ago
- Structural Variant Identification Method using Genome Assemblies☆140Sep 16, 2022Updated 3 years ago
- ☆45Dec 11, 2025Updated 4 months ago
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated last month
- haplotypic duplication identification tool☆283Oct 30, 2025Updated 5 months ago
- PASA software☆199Feb 12, 2025Updated last year
- MCHelper: An automatic tool to curate transposable element libraries☆45Jul 3, 2025Updated 9 months ago
- Version 5 of the CAFE phylogenetics software☆165Mar 16, 2026Updated last month
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆178Apr 14, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Genome annotation with AUGUSTUS☆330Aug 15, 2025Updated 8 months ago
- Using Deep Learning to predict gene annotations☆283Mar 6, 2026Updated last month
- ☆92Apr 7, 2026Updated last week
- source code for EVM☆124Nov 29, 2024Updated last year
- FastK based version of Merqury☆32Jan 19, 2026Updated 3 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆766Updated this week
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆51Jan 16, 2024Updated 2 years ago