mtokuyama / ERVmapLinks
ERVmap is one part curated database of human proviral ERV loci and one part a stringent algorithm to determine which ERVs are transcribed in their RNA seq data.
☆24Updated 4 years ago
Alternatives and similar repositories for ERVmap
Users that are interested in ERVmap are comparing it to the libraries listed below
Sorting:
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Genomic coordinates of problematic genomic regions as GRanges☆46Updated 2 months ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆37Updated last year
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 4 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 9 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆81Updated 4 years ago
- IDR☆30Updated 2 years ago
- An R interface to the MEME Suite☆53Updated 5 months ago
- Tools for working with BUS files☆102Updated 5 months ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- ☆39Updated 5 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- Estimate locus specific human LINE-1 expression.☆39Updated last week
- BAGEL software☆28Updated last year
- Tutorial Website☆60Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 9 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆60Updated last month
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- A continually expanding collection of RNA-seq tools☆52Updated last month
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆43Updated 2 years ago
- Links to ATAC-seq analysis tools☆71Updated 4 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆79Updated 5 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- ☆62Updated 5 years ago
- direct comparison of circular and linear RNA expression☆23Updated 4 years ago