ERVmap is one part curated database of human proviral ERV loci and one part a stringent algorithm to determine which ERVs are transcribed in their RNA seq data.
☆25Sep 28, 2021Updated 4 years ago
Alternatives and similar repositories for ERVmap
Users that are interested in ERVmap are comparing it to the libraries listed below
Sorting:
- Phenotype detection in pooled genetic perturbation screens☆12Mar 13, 2024Updated last year
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆14Apr 12, 2023Updated 2 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Nov 7, 2025Updated 3 months ago
- A light weight shiny based web app to access TCGA data☆15Apr 29, 2015Updated 10 years ago
- ☆19Oct 27, 2021Updated 4 years ago
- Genomic coordinates of problematic genomic regions as GRanges☆51Dec 10, 2025Updated 2 months ago
- Quantification of transposable element expression using RNA-seq☆88Feb 8, 2024Updated 2 years ago
- Methods for visualization and analysis of spatially-resolved gene expression☆22Aug 14, 2025Updated 6 months ago
- Predicted cell-cell interactions of the aging mouse brain☆20Sep 24, 2019Updated 6 years ago
- Website☆16Aug 30, 2025Updated 6 months ago
- single cell analysis of treatment naive and treated human PDAC☆25May 27, 2022Updated 3 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20May 11, 2018Updated 7 years ago
- A toolkit for working with ATAC-seq data.☆24Jan 22, 2026Updated last month
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Jul 19, 2022Updated 3 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆26Jan 11, 2023Updated 3 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- Going beyond the t-test in R and introducing linear regression and ANOVA (http://tinyurl.com/linear-models-r)☆34Feb 7, 2023Updated 3 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Nov 17, 2023Updated 2 years ago
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Mar 11, 2020Updated 5 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated last year
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆37Jun 15, 2018Updated 7 years ago
- ☆30May 28, 2019Updated 6 years ago
- Define regions in the genome☆33Mar 3, 2022Updated 4 years ago
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆10Feb 23, 2026Updated last week
- ☆40Sep 29, 2022Updated 3 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆38Apr 5, 2022Updated 3 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆97Jan 30, 2026Updated last month
- Functions for handling RNA-seq files and formats as input and output for scrattch functions.☆11Aug 20, 2025Updated 6 months ago
- ☆10Jun 15, 2017Updated 8 years ago
- class materials for MCB517A through UW/Fred Hutch☆12Dec 5, 2019Updated 6 years ago
- ☆10Jan 20, 2023Updated 3 years ago
- A flexible and fast sgRNA counter from FASTQ Files☆11Dec 29, 2025Updated 2 months ago
- The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer☆11Oct 30, 2025Updated 4 months ago
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆13Updated this week
- Supporting information of 'Single-cell RNA sequencing of a European and an African lymphoblastoid cell line'☆10Feb 27, 2020Updated 6 years ago
- R code for Combining gene mutation with gene expression data improves outcome prediction in myelodysplastic syndromes☆13Mar 23, 2016Updated 9 years ago
- ☆12Apr 26, 2020Updated 5 years ago
- GeneDMRs is an R package to detect the differentially methylated regions based on genes, gene body, CpG islands and gene body interacted …☆10Nov 18, 2023Updated 2 years ago
- Reproduce analyses in Harmony Manuscript☆11Feb 21, 2020Updated 6 years ago