mtokuyama / ERVmapLinks
ERVmap is one part curated database of human proviral ERV loci and one part a stringent algorithm to determine which ERVs are transcribed in their RNA seq data.
☆24Updated 3 years ago
Alternatives and similar repositories for ERVmap
Users that are interested in ERVmap are comparing it to the libraries listed below
Sorting:
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- A list of alternative splicing analysis resources☆44Updated 3 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- ☆15Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- ☆27Updated 8 months ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆30Updated last year
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆33Updated 2 years ago
- ☆34Updated 6 years ago
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆32Updated 3 years ago
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆28Updated 6 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated last year
- ☆28Updated 8 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated last month
- binned motif enrichment analysis and visualisation☆40Updated 2 months ago
- ☆38Updated 5 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Tools which deal with multiple single cell measurements☆23Updated 2 weeks ago
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- A continually expanding collection of RNA-seq tools☆50Updated 8 months ago
- Snakemake pipeline for running MAJIQ☆23Updated last year
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year