twlab / TEProf2Paper
TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
☆23Updated 2 years ago
Alternatives and similar repositories for TEProf2Paper:
Users that are interested in TEProf2Paper are comparing it to the libraries listed below
- scripts for analyzing the CVDC data.☆18Updated 5 years ago
- Detection of differential translated genes using Ribo-seq☆15Updated 4 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 9 months ago
- ☆24Updated 2 years ago
- ☆17Updated 4 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆26Updated 3 weeks ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- ☆37Updated 5 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆19Updated 9 months ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- ☆21Updated last month
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated last month
- HiC for copy Number variation and Translocation detection☆38Updated 3 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- ☆18Updated last year
- 4C-seq processing pipeline☆23Updated last month
- Pipeline for Cut&Tag analysis☆21Updated 2 weeks ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- ☆23Updated 3 years ago
- A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential anal…☆14Updated 2 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated last month
- R package to detect splicing QTLs (sQTLs)☆12Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆18Updated last month