TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
☆30May 5, 2023Updated 3 years ago
Alternatives and similar repositories for TEProf2Paper
Users that are interested in TEProf2Paper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Nov 15, 2020Updated 5 years ago
- 生物信息学入门的系列课程，包括Linux, shell, Python 编程，建库测序，基因组学，以及系统进化，常用软件使用等内容。☆24Sep 16, 2021Updated 4 years ago
- BISulfite-seq CUI Toolkit☆28Aug 18, 2026Updated 2 weeks ago
- Software for Quantifying Interspersed Repeat Expression☆69Jun 20, 2022Updated 4 years ago
- Transposable Element Finder - Detection of active transposable elements from NGS data☆10Apr 14, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 8 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- issues for semina "Data Visulization"☆13Dec 23, 2025Updated 8 months ago
- ☆16May 7, 2023Updated 3 years ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- ☆12Feb 19, 2021Updated 5 years ago
- GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation☆22Mar 26, 2022Updated 4 years ago
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tool comparison for detecting differentially expressed individual transposable elements☆12Jan 7, 2022Updated 4 years ago
- Methylation analysis pipeline for genome graph☆16May 25, 2025Updated last year
- Quantification of transposable element expression using RNA-seq☆95Feb 8, 2024Updated 2 years ago
- ☆15Feb 22, 2022Updated 4 years ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 3 years ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆293Aug 10, 2026Updated 3 weeks ago
- AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data☆12May 19, 2019Updated 7 years ago
- Scripts for bioinformatics data processing and analysis☆12Nov 7, 2023Updated 2 years ago
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated last year
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Workflow to reproduce results and figures for the second BeatAML manuscript☆18Jun 28, 2022Updated 4 years ago
- ☆21Apr 20, 2026Updated 4 months ago
- ☆18Nov 26, 2023Updated 2 years ago
- A developed pipeline for expressed endogenous retrovirus identification.☆17Oct 9, 2024Updated last year
- A graduate-level elective course: Python Programming for Life Science Students☆10Mar 26, 2026Updated 5 months ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bedfile perturbation tool☆17Mar 6, 2026Updated 5 months ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆21Jan 17, 2020Updated 6 years ago
- ☆10Feb 25, 2024Updated 2 years ago
- ☆35Jun 12, 2024Updated 2 years ago
- ☆20Oct 31, 2025Updated 10 months ago
- Assemble and following pipeline used in wisent genome paper.☆17Dec 23, 2016Updated 9 years ago
- ☆16Sep 20, 2022Updated 3 years ago