twlab / TEProf2Paper
TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
☆23Updated last year
Alternatives and similar repositories for TEProf2Paper:
Users that are interested in TEProf2Paper are comparing it to the libraries listed below
- scripts for analyzing the CVDC data.☆17Updated 5 years ago
- ☆23Updated 2 years ago
- ☆17Updated 4 years ago
- ☆18Updated 7 months ago
- RNA editing tests☆17Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Detection of differential translated genes using Ribo-seq☆15Updated 3 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 8 months ago
- 4C-seq processing pipeline☆23Updated last week
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆22Updated 2 months ago
- ☆24Updated last year
- ☆21Updated 2 weeks ago
- ATAC-seq processing pipeline☆32Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 3 months ago
- Quantitation and visualization of differential alternative splicing events☆10Updated last year
- ☆13Updated 7 years ago
- ☆36Updated 5 years ago
- Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements☆21Updated 2 months ago
- Pipeline for Cut&Tag analysis☆18Updated 2 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆42Updated last month
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Locate transgenic insertion sites☆11Updated 2 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated last year
- RNA-seq workflow: differential transcript usage☆21Updated last year
- ☆18Updated 11 months ago
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Tutorial Website☆57Updated 4 years ago
- ☆32Updated 9 months ago