Alternatives and similar repositories for admixtools:

Users that are interested in admixtools are comparing it to the libraries listed below

• dipetkov / eems
  Estimating Effective Migration Surfaces
  ☆103Updated last year
• bodkan / slendr
  Population genetic simulations in R 🌍
  ☆58Updated 3 weeks ago
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆148Updated last year
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated last year
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆78Updated 8 months ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 2 months ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆25Updated 9 months ago
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆64Updated 2 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆58Updated 5 months ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆85Updated 3 years ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆108Updated 5 months ago
• kholsinger / Lecture-Notes-in-Population-Genetics
  LaTeX and associated files for lecture notes used in EEB 5348 at the University of Connecticut
  ☆34Updated last year
• emmanuelparadis / pegas
  Population and Evolutionary Genetics Analysis System
  ☆28Updated last month
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• pgugger / LandscapeGenomics
  Tutorials for bioinformatics and data analysis related to landscape genomics
  ☆27Updated 6 years ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆35Updated last year
• szpiech / selscan
  Haplotype based scans for selection
  ☆124Updated last week
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆18Updated last week
• MesserLab / SLiM-Extras
  Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself
  ☆42Updated last week
• roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
  Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
  ☆32Updated last year
• kr-colab / diploSHIC
  feature-based deep learning for the identification of selective sweeps
  ☆54Updated last month
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆57Updated last week
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆65Updated 11 months ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆45Updated 7 months ago
• halasadi / MAPS
  software for the MAPS method
  ☆24Updated 6 years ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 6 years ago
• grunwaldlab / Population_Genetics_in_R
  A primer for computational tools to analyze genetics of populations in R
  ☆86Updated 4 years ago
• cooplab / Popgen_EVE102_2012
  Pdfs of slides from 2018 popgen course
  ☆36Updated 6 years ago
• rwdavies / QUILT
  QUILT: Low coverage whole genome sequence imputation with large reference panels
  ☆58Updated 5 months ago
• priyamoorjani / DATES
  Method for dating admixture in ancient DNA specimens
  ☆25Updated 3 years ago