Alternatives and similar repositories for admixtools:

Users that are interested in admixtools are comparing it to the libraries listed below

• bodkan / slendr
  Population genetic simulations in R 🌍
  ☆55Updated 2 weeks ago
• dipetkov / eems
  Estimating Effective Migration Surfaces
  ☆102Updated last year
• emmanuelparadis / pegas
  Population and Evolutionary Genetics Analysis System
  ☆29Updated 6 months ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆52Updated 8 months ago
• ANGSD / NgsRelate
  ☆43Updated last year
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆61Updated last year
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆24Updated 6 months ago
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated last year
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆57Updated last month
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆73Updated 5 months ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆56Updated 2 months ago
• JiscaH / sequoia
  R package for pedigree inference based on SNP data
  ☆26Updated 7 months ago
• szpiech / selscan
  Haplotype based scans for selection
  ☆116Updated 2 months ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆85Updated 2 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated 9 months ago
• jade-cheng / ohana
  mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.
  ☆82Updated 3 years ago
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆43Updated last year
• MesserLab / SLiM-Extras
  Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself
  ☆42Updated 3 months ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 5 years ago
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆15Updated this week
• nt246 / lcwgs-guide-tutorial
  ☆79Updated 3 years ago
• cooplab / Popgen_EVE102_2012
  Pdfs of slides from 2018 popgen course
  ☆36Updated 6 years ago
• roberta-davidson / ADMIXTURE-smartPCA-PLINK-and-EIGENSOFT
  Scripts and notes on how to analyse ancient DNA genotype data to understand population structure
  ☆30Updated last year
• halasadi / MAPS
  software for the MAPS method
  ☆24Updated 5 years ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆106Updated 2 months ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆41Updated 5 years ago
• gvbarroso / iSMC
  The integrated Sequentially Markovian Coalescent
  ☆12Updated 9 months ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆44Updated 3 months ago
• YinLiLin / hibayes
  Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies
  ☆49Updated last year
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆63Updated 8 months ago