Alternatives and similar repositories for admixtools

Users that are interested in admixtools are comparing it to the libraries listed below

• dipetkov / eems
  Estimating Effective Migration Surfaces
  ☆109Updated 2 years ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated 10 months ago
• bodkan / slendr
  Population genetic simulations in R
  ☆61Updated 2 weeks ago
• royfrancis / pophelper
  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
  ☆149Updated 2 years ago
• silastittes / shiny_popgen
  Shiny apps for teaching Population Genetics
  ☆66Updated 2 years ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆86Updated last year
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆68Updated last month
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆27Updated 3 months ago
• jade-cheng / ohana
  mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.
  ☆87Updated 4 years ago
• pgugger / LandscapeGenomics
  Tutorials for bioinformatics and data analysis related to landscape genomics
  ☆29Updated 6 years ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• priyamoorjani / DATES
  Method for dating admixture in ancient DNA specimens
  ☆28Updated 3 years ago
• gbradburd / conStruct
  method for modeling continuous and discrete population genetic structure
  ☆38Updated last year
• grunwaldlab / Population_Genetics_in_R
  A primer for computational tools to analyze genetics of populations in R
  ☆89Updated 4 years ago
• bodkan / demografr
  A framework for simulation-based inference in evolutionary biology
  ☆26Updated last week
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆23Updated 2 years ago
• FePhyFoFum / phyx
  phylogenetics tools for linux (and other mostly posix compliant) computers
  ☆122Updated 10 months ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• millanek / fineRADstructure
  A package for population structure inference from RAD-seq data
  ☆34Updated 4 years ago
• ngthomas / microhaplot
  microhaplotype visualizer and analyzer
  ☆20Updated 4 years ago
• emmanuelparadis / pegas
  Population and Evolutionary Genetics Analysis System
  ☆29Updated 9 months ago
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆61Updated 2 weeks ago
• speciationgenomics / presentations
  Presentations from the course
  ☆38Updated 2 years ago
• MesserLab / SLiM-Extras
  Extra add-ons that may be useful for people using SLiM, but that are not part of the SLiM project itself
  ☆43Updated last month
• pievos101 / PopGenome
  An Efficient Swiss Army Knife for Population Genomic Analyses in R
  ☆38Updated last year
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆96Updated 3 months ago
• bodkan / admixr
  An R interface for the ADMIXTOOLS software
  ☆34Updated 2 weeks ago
• lvclark / polyRAD
  Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
  ☆31Updated 9 months ago
• auton1 / LDhat
  Estimate recombination rates from population genetic data
  ☆70Updated 5 years ago
• ANGSD / NgsRelate
  ☆44Updated 8 months ago