gifford-lab / ec2-launcher-proView external linksLinks
A tool that lauches docker jobs on Amazon EC2.
☆10May 7, 2019Updated 6 years ago
Alternatives and similar repositories for ec2-launcher-pro
Users that are interested in ec2-launcher-pro are comparing it to the libraries listed below
Sorting:
- Docker image for the DeepBind method.☆16Nov 7, 2015Updated 10 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30May 10, 2018Updated 7 years ago
- JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage☆13Jun 11, 2025Updated 8 months ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆31Jan 19, 2021Updated 5 years ago
- A comprehensive command-line based pipeline for the analysis of direct injection FT-ICR mass spectrometry data☆12Feb 3, 2026Updated last week
- ASAP-SML: An Antibody Sequence Analysis Pipeline Using Statistical Testing and Machine Learning☆11Jul 6, 2023Updated 2 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆34Nov 21, 2016Updated 9 years ago
- OLD REPOSITORY - Go to☆31Feb 6, 2018Updated 8 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆10Oct 6, 2017Updated 8 years ago
- IPython notebooks for "Computer Simulations of Sensory Systems"☆10Nov 15, 2024Updated last year
- Seqnature: incorporate SNPs and Indels into a reference genome☆16Sep 6, 2016Updated 9 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 10 months ago
- lncRNA-Py is a development package for applying machine learning and deep learning to the problem of lncRNA classification, i.e. predicti…☆12Jan 24, 2025Updated last year
- Genevieve client: using GenNotes, report ClinVar for individual genomes & add consensus notes☆10Aug 2, 2016Updated 9 years ago
- A deep learning package for predicting TF binding☆42Jan 23, 2020Updated 6 years ago
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆12Aug 26, 2021Updated 4 years ago
- Web client (static HTML and Javascript) built with Google Web Toolkit☆44Jul 21, 2011Updated 14 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 3 years ago
- A Perl pipeline for identifying marker genes and build phylogenetic trees for a set of genomes☆14Jun 19, 2017Updated 8 years ago
- Implementation of Variance Reduction Techniques in Julia☆11Sep 6, 2016Updated 9 years ago
- Framework to facilitate SIMD programming, without any tedious SIMD intrinsics.☆12Dec 20, 2021Updated 4 years ago
- ☆11Oct 21, 2016Updated 9 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- ☆11Sep 2, 2024Updated last year
- lightning☆11Oct 20, 2015Updated 10 years ago
- BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…☆12May 9, 2013Updated 12 years ago
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- Direct RNA publication scripts☆11Sep 20, 2017Updated 8 years ago
- ☆12Nov 15, 2018Updated 7 years ago
- Software tool for metabolic modelling in Systems Biology☆10Dec 30, 2020Updated 5 years ago
- Differential Mutation Analysis☆11May 24, 2020Updated 5 years ago
- Run Jupyter on Orchestra 2☆12Jan 18, 2023Updated 3 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 8 years ago
- Percentile-normalization method for correcting batch effects in case-control studies☆12Oct 26, 2019Updated 6 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Apr 25, 2022Updated 3 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- A detailed guide to analise and integrate small-RNASeq and RNASeq samples using miARma-Seq☆11Oct 16, 2019Updated 6 years ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 8 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 10 years ago