Seqnature: incorporate SNPs and Indels into a reference genome
☆16Sep 6, 2016Updated 9 years ago
Alternatives and similar repositories for Seqnature
Users that are interested in Seqnature are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Expectation-Maximization algorithm for Allele-Specific Expression☆22May 9, 2023Updated 3 years ago
- ☆17Sep 24, 2013Updated 12 years ago
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago
- A tool for projecting genomic alignments to transcriptomic coordinates☆37May 28, 2024Updated 2 years ago
- An R package for generating comparative regional association plots☆17Sep 30, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Dec 26, 2023Updated 2 years ago
- ☆10Dec 12, 2017Updated 8 years ago
- ☆11Jun 23, 2017Updated 9 years ago
- An online EM implementation of the MEME model for fast motif discovery in large ChIP-Seq and DNase-Seq Footprinting data☆32May 22, 2018Updated 8 years ago
- command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig☆17May 2, 2020Updated 6 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Ebola virus surveillance☆15Aug 28, 2016Updated 9 years ago
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- Various Ideas for Confounder Adjustment in Regression☆24May 8, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A versatile and efficient RNA-Seq read counting tool☆16Mar 30, 2016Updated 10 years ago
- RNA-Seq Unified Mapper☆27Sep 9, 2022Updated 3 years ago
- A small collection of useful tutorials and links☆15Apr 13, 2024Updated 2 years ago
- A powerful toolset for genome arithmetic.☆143May 28, 2021Updated 5 years ago
- Course material for CSAMA 2015: Statistics and Computing in Genome Data Science☆11Mar 15, 2023Updated 3 years ago
- SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis☆25Apr 7, 2015Updated 11 years ago
- Little sequence file utilities meant to work within Unix pipelines☆36Jan 20, 2015Updated 11 years ago
- GeneNetwork (1st generation) - will be discontinued☆17Jan 21, 2023Updated 3 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆19Jan 16, 2026Updated 7 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- DEPRECATED. Please visit our new repository (cytoscape/cyREST)☆27Jul 11, 2017Updated 9 years ago
- SRA python tools☆11Jun 9, 2021Updated 5 years ago
- yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…☆20Dec 6, 2017Updated 8 years ago
- Make and use nested directory trees corresponding to combinatorial choices of parameters☆20Apr 23, 2017Updated 9 years ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆22Jan 23, 2022Updated 4 years ago
- Read alignment with a multi-genome reference☆23Jan 14, 2020Updated 6 years ago
- Indel caller for DNA-seq or RNA-seq☆16Aug 8, 2023Updated 3 years ago
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 6 years ago
- Kraken2 Server☆23Nov 24, 2025Updated 8 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Transactions, Keys, and Values☆22Nov 3, 2017Updated 8 years ago
- Linear-time de novo Long Read Assembler☆43Mar 19, 2026Updated 4 months ago
- Reference-free variant discovery in large eukaryotic genomes☆42Jul 13, 2021Updated 5 years ago
- VCF parser using the Python pandas library☆27Feb 6, 2022Updated 4 years ago
- personal genome constructor☆11May 29, 2025Updated last year
- Request for comments on interchangeable bioinformatics containers☆39Jun 18, 2019Updated 7 years ago
- Tree hidden Markov model for learning epigenetic states in multiple cell types☆29Jul 11, 2013Updated 13 years ago