jaxcs / SeqnatureLinks
Seqnature: incorporate SNPs and Indels into a reference genome
☆16Updated 8 years ago
Alternatives and similar repositories for Seqnature
Users that are interested in Seqnature are comparing it to the libraries listed below
Sorting:
- Graphical assessment of structrial variants using 10x genomics data☆10Updated 8 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- Numerical Encoding for Human Genetic Variants☆41Updated 2 years ago
- ☆12Updated 8 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 12 years ago
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Updated 8 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- A software for the multispecies design of CRISPR/Cas9 libraries☆35Updated 2 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- ☆15Updated 9 years ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Updated 6 years ago
- Population Reference Graphs for the HLA and MHC.☆35Updated 6 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Exon-exon splice junctions across SRA☆41Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆17Updated 6 years ago
- Bioinformatics Open Source Sequence machine☆33Updated last year
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 6 months ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago