jaxcs / SeqnatureLinks
Seqnature: incorporate SNPs and Indels into a reference genome
☆16Updated 9 years ago
Alternatives and similar repositories for Seqnature
Users that are interested in Seqnature are comparing it to the libraries listed below
Sorting:
- Flexible Integration of Data with Deep LEarning☆51Updated 2 years ago
- Scalable RNA-seq analysis☆73Updated 5 years ago
- VCF parser using the Python pandas library☆27Updated 3 years ago
- Library for manipulating genomic variants and predicting their effects☆85Updated last year
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.☆41Updated 10 months ago
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Updated 8 years ago
- probability of mendelian error in trios.☆11Updated 10 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Updated 8 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 6 years ago
- python access to UCSC genomes database☆136Updated 5 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- ☆45Updated 9 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆22Updated 4 years ago
- Efficient handling of FASTQ files from Python☆51Updated 2 months ago
- Fast spliced aligner with low memory requirements☆41Updated 10 years ago
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆16Updated 11 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient☆14Updated 3 years ago
- Python library and scripts for retrieval and storage of genomics data in HDF5 format☆27Updated 6 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆60Updated this week
- ☆15Updated 9 years ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 7 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- Exon-exon splice junctions across SRA☆43Updated 4 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Updated 6 years ago
- 3D hotspot mutation proximity analysis tool☆52Updated 2 years ago
- Liability Estimation for Case-Control Studies☆10Updated 5 years ago
- Python wrapper for MaxEntScan to calculate splice site strength.☆17Updated 3 years ago
- A versatile and efficient RNA-Seq read counting tool☆16Updated 9 years ago