sequencing / gvcftoolsLinks
Utilities to create and analyze gVCF files
☆38Updated 8 years ago
Alternatives and similar repositories for gvcftools
Users that are interested in gvcftools are comparing it to the libraries listed below
Sorting:
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- An awk-like VCF parser☆56Updated last year
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Updated 5 years ago
- SV detection from paired end reads mapping☆38Updated 15 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Structural Variant Index☆75Updated 7 months ago
- Thousand Variant Callers Project Repository☆74Updated 5 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 11 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- ☆54Updated 5 years ago
- A read extraction and realignment tool for next generation sequencing data☆101Updated 2 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago