sequencing / gvcftoolsLinks
Utilities to create and analyze gVCF files
☆38Updated 8 years ago
Alternatives and similar repositories for gvcftools
Users that are interested in gvcftools are comparing it to the libraries listed below
Sorting:
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- An awk-like VCF parser☆56Updated 2 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 5 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Updated 4 months ago
- a wee tool for random access into BGZF files.☆86Updated 7 years ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆52Updated 7 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- RTG Core: Software for alignment and analysis of next-gen sequencing data.☆48Updated 8 months ago
- A read extraction and realignment tool for next generation sequencing data☆104Updated 3 years ago
- Aligner for sequencing data☆21Updated 9 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 5 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 4 years ago
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- UCSC Nanopore☆44Updated 6 years ago
- Structural Variant Index☆75Updated last year
- RUFUS k-mer based genomic variant detection☆54Updated last month
- Assembly Based ReAligner☆74Updated 7 years ago
- 10x Genomics Reads Simulator☆46Updated 2 years ago